PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298245.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

LSD

Protein Properties

Length: 170aa MW: 17788.7 Da PI: 8.4368

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298245.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.5	1.1e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA++V+CalC+tV XP_021298245.1 7 CSGCRSILLYPRGATNVCCALCNTV 31 ************************9 PP
2	zf-LSD1	50.3	3.9e-16	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA+sVRC++C+t+ XP_021298245.1 46 CGGCRTLLMYTRGATSVRCSCCQTI 70 ***********************97 PP
3	zf-LSD1	43.8	4.2e-14	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L YP+GApsV+Ca+C+ V XP_021298245.1 84 CGHCRTTLIYPYGAPSVKCAVCQYV 108 ***********************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence
MQSQLVCSGC RSILLYPRGA TNVCCALCNT VTQVPPPGMD MAQLICGGCR TLLMYTRGAT 60 SVRCSCCQTI TLAPASNQIA HINCGHCRTT LIYPYGAPSV KCAVCQYVTN VGMGNVRVPL 120 PVNRPNGVAA TGTTPSTSTS QTVVVENPMS VDESGKLVTN VVVGVTTDKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	6e-78	LSD family protein