PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298031.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 518aa MW: 56498.3 Da PI: 4.9931

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298031.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.5e-11	334	376	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A++Y+k+L XP_021298031.1 334 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 376 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MVLGANGIVW MDGEEEEDAV SSWTRNNNYN SNSNNEIETK EEDLTMSGAC LSTFKSMLDT 60 DWYMNQDLQI RELGFCSSQV DNNPLLHQPI DSSASCSPSQ TFTLDPSQSH PFLPPKSCFS 120 SLLNVSCSNP FDNAFDFASE TAFLGHFQPN QTPNLMGFPQ TQMGTPEFSS SSEFQGTRLF 180 TGTDNASALS GGFSAGSFEG FDGSGNALFM NRAKILKPLD VFPSVGAQPT LFQKRAAMRQ 240 GSGGAEKLGN LDVSGLRFGG EASDGKRKRH EEGDIEEASI DVSGLNYDSD ERNDDCKVEE 300 SVKNGGCNSN ATSTVTGGGD QKGKKKGMPA KNLMAERRRR KKLNDRLYML RSVVPKISKM 360 DRASILGDAI DYLKELLQRI NDLHNELESA PPGSSMPPSS SFHPLTPTPP TLPCRVKEEL 420 CPSSLPSPKS QPAKVEVRVR EGRAVNIHMF CARRPGLLLS TMRALDNLGL DIQQAVISCF 480 NGFALDVFRA EQCREGQDVL PEQIKAVLLD SAGFHGIM

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MVLGANGIVW MDGEEEEDAV SSWTRNNNYN SNSNNEIETK EEDLTMSGAC LSTFKSMLDT  60
DWYMNQDLQI RELGFCSSQV DNNPLLHQPI DSSASCSPSQ TFTLDPSQSH PFLPPKSCFS  120
SLLNVSCSNP FDNAFDFASE TAFLGHFQPN QTPNLMGFPQ TQMGTPEFSS SSEFQGTRLF  180
TGTDNASALS GGFSAGSFEG FDGSGNALFM NRAKILKPLD VFPSVGAQPT LFQKRAAMRQ  240
GSGGAEKLGN LDVSGLRFGG EASDGKRKRH EEGDIEEASI DVSGLNYDSD ERNDDCKVEE  300
SVKNGGCNSN ATSTVTGGGD QKGKKKGMPA KNLMAERRRR KKLNDRLYML RSVVPKISKM  360
DRASILGDAI DYLKELLQRI NDLHNELESA PPGSSMPPSS SFHPLTPTPP TLPCRVKEEL  420
CPSSLPSPKS QPAKVEVRVR EGRAVNIHMF CARRPGLLLS TMRALDNLGL DIQQAVISCF  480
NGFALDVFRA EQCREGQDVL PEQIKAVLLD SAGFHGIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	342	KKKGMPAKNLMAERRRRKK
2	336	343	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-150	bHLH family protein