PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298004.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 291aa    MW: 32503.6 Da    PI: 6.9014
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298004.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24.3e-20103200195
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     f+k+l++sdv++++r++lpk+ ae+h   ++++e++ +++ d++g  +W++k+++  +++s++yvl+ ++ eFv+ +gL+ gDf++ +  ++ ++
  XP_021298004.1 103 FQKELKNSDVSSLRRMILPKRAAEAHlpVLESKEGILISMDDLDGlHVWSFKYRFwpNNNSRMYVLE-NTGEFVNTHGLQLGDFIMVY--QDsQN 194
                     99**************************55666899*********9*******9989999999***9.******************99..44355 PP

                     E..EEE CS
              B3  90 felvvk 95 
                     +++v++
  XP_021298004.1 195 QNYVIQ 200
                     556665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MMAAATPSVH EKPEAFALVA GVEGVTVGGD KTHQASGRSG LTRDLVAAVP SFGVNRKKRM  60
ARQRRSSSTI KLLSFTNSSS SSHVPSSTLP ARVIDPKKLR FLFQKELKNS DVSSLRRMIL  120
PKRAAEAHLP VLESKEGILI SMDDLDGLHV WSFKYRFWPN NNSRMYVLEN TGEFVNTHGL  180
QLGDFIMVYQ DSQNQNYVIQ AKKASDQDVY TDIARNAVND LFLHDYEVSK SSSYYYPTMD  240
DAGMSFIYDT TFSNDSPLDF LGGSMTNYSR IGSLESFGSV ENLSLDEFYQ V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-104B3 family protein