PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297802.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 822aa MW: 93475 Da PI: 5.7995

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.7	3.1e-31	77	172	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++++ ++k+rr r+ tr gCka ++v+++++gkw+v+kle+ HnHel XP_021297802.1 77 NFYNAYAKQTGFSIRVNSYYRSKKDNSIISREFCCSKEGFRREKRSRnvdsgdDTKKRRARPITREGCKALMTVRRRDNGKWYVAKLEKSHNHEL 171 6***************************************999889999*************************************9 PP FAR1 90 a 90 + XP_021297802.1 172 V 172 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 822 aa Download sequence
MEEEPSSEGK EIVNSYVALE DEGDGCCVVK DDANPIVLDD PGKEDEHLNL EFSQYLVGGA 60 LEPTLGMEFT SEDDARNFYN AYAKQTGFSI RVNSYYRSKK DNSIISREFC CSKEGFRREK 120 RSRNVDSGDD TKKRRARPIT REGCKALMTV RRRDNGKWYV AKLEKSHNHE LVTPAMRHFL 180 RSHKEEYDPK KSLSGSISSS GVGLNASVNV LTEECNSFGE LGFATHNNIN FIGKGRLSNF 240 GVDAQSLLGF FKVMQARDPA FYYAIQVDEE DRLSSVFWVD TRSRIAYNCF SDVVSFDTTY 300 QVNQYKMPFA PFIGVNHHRQ SVLFGCALLA DETESTFIWL FTTWLEAMSG RQPGLLITDY 360 DSAISRAVES VFPQSSHRYC KWHILSKMPK EMGHVCSALP KTFQVEFDKC INKSETPEEF 420 ESAWHLLLDK YNLRGNEWLQ SLYIDRKLWV STYVRDTFFA AMYTTQRSKS VNSLFDGYVS 480 AGTTLQDFAE QYEKALDDRY EKEARAEFET FYTKPVLKTP LPMEKQAAEV YTRKLFSVFQ 540 DEIYESLVLA VNLSQDEGLS RTYEVARFDE EHKVYFVGLN IADQMASCSC KMFEFEGILC 600 RHVIAVVKAT NIFLLPQHYI LKRWTRNAKD EAMLDAMPSV EMNGNSREGK NSQYNLLYQE 660 AVKCAEEGMA SDHSFKFALN ALREARIKII TAKKNAINAQ KLETAASTNF LDENTTVGSQ 720 VDSSSEVVTL QDNQQAKMRD SCTENNISKY ASEQSSSRVS ICTNCKCPGH DSLSCTTKLN 780 NKLLFLTSAA NESRVLSWLQ LSSALQYSSC SAANWIWFSS QD

Sequence ? help Back to Top

Protein Sequence Length: 822 aa Download sequence

MEEEPSSEGK EIVNSYVALE DEGDGCCVVK DDANPIVLDD PGKEDEHLNL EFSQYLVGGA  60
LEPTLGMEFT SEDDARNFYN AYAKQTGFSI RVNSYYRSKK DNSIISREFC CSKEGFRREK  120
RSRNVDSGDD TKKRRARPIT REGCKALMTV RRRDNGKWYV AKLEKSHNHE LVTPAMRHFL  180
RSHKEEYDPK KSLSGSISSS GVGLNASVNV LTEECNSFGE LGFATHNNIN FIGKGRLSNF  240
GVDAQSLLGF FKVMQARDPA FYYAIQVDEE DRLSSVFWVD TRSRIAYNCF SDVVSFDTTY  300
QVNQYKMPFA PFIGVNHHRQ SVLFGCALLA DETESTFIWL FTTWLEAMSG RQPGLLITDY  360
DSAISRAVES VFPQSSHRYC KWHILSKMPK EMGHVCSALP KTFQVEFDKC INKSETPEEF  420
ESAWHLLLDK YNLRGNEWLQ SLYIDRKLWV STYVRDTFFA AMYTTQRSKS VNSLFDGYVS  480
AGTTLQDFAE QYEKALDDRY EKEARAEFET FYTKPVLKTP LPMEKQAAEV YTRKLFSVFQ  540
DEIYESLVLA VNLSQDEGLS RTYEVARFDE EHKVYFVGLN IADQMASCSC KMFEFEGILC  600
RHVIAVVKAT NIFLLPQHYI LKRWTRNAKD EAMLDAMPSV EMNGNSREGK NSQYNLLYQE  660
AVKCAEEGMA SDHSFKFALN ALREARIKII TAKKNAINAQ KLETAASTNF LDENTTVGSQ  720
VDSSSEVVTL QDNQQAKMRD SCTENNISKY ASEQSSSRVS ICTNCKCPGH DSLSCTTKLN  780
NKLLFLTSAA NESRVLSWLQ LSSALQYSSC SAANWIWFSS QD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein