PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297743.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C2H2

Protein Properties

Length: 536aa MW: 59506.7 Da PI: 6.848

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.8e-05	45	67	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H+r H XP_021297743.1 45 FQCKFCGKDFESMKALFGHMRHH 67 89*******************99 PP
2	zf-C2H2	14.8	8.1e-05	77	97	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg+ F + L H+r+H XP_021297743.1 77 CQECGRKFQSLKGLAAHMRLH 97 *******************99 PP
3	zf-C2H2	14.6	9.8e-05	369	391	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC +C+k+F+++ L H+ H XP_021297743.1 369 YKCRICDKTFKSHQALGGHQTFH 391 9***************9999877 PP

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence
MERNSGKGKA KENMDFQGYG LRDNPKKSWK SLSFTDGSSS SMLKFQCKFC GKDFESMKAL 60 FGHMRHHSGR ERKRVHCQEC GRKFQSLKGL AAHMRLHPAK LGVSGEPGPC GPRQDLVLES 120 ITVRRKRSKR MRYSNAPNSS PSSLNETSDV FEIDQEVEDV ALCLIMLSGG VRNWSEFNSS 180 RESSDNSVIK SLHQSKEIIQ NETGIPFGDG DESFQMKKPR VDKSDPDVSA SMNVFYEKTI 240 SECKELDSGI VTDKEEKIGS EAPNDMFCRD VEFRVSKVED ESGFELYATE IEERNSGEKM 300 TFRSIEVESG KDLMEGLDLA GLGSTKLSSC KDAMFDACDA EPGGNSSNKL ICTPLNSEMS 360 DDSKKKNRYK CRICDKTFKS HQALGGHQTF HRKSNSCAIE QIENCEKSTQ SSSSPKTEAS 420 RKFLRVENVE NSVEQEINGV TSNGTSRCKV HECGICFKVF ASGQALGGHK RSHILKESET 480 RDKQPPMQIG FSDISDVLDL NLPAIHNEEA NGDVGFKSCR VGSDCKSEPL VSLVAN

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence

MERNSGKGKA KENMDFQGYG LRDNPKKSWK SLSFTDGSSS SMLKFQCKFC GKDFESMKAL  60
FGHMRHHSGR ERKRVHCQEC GRKFQSLKGL AAHMRLHPAK LGVSGEPGPC GPRQDLVLES  120
ITVRRKRSKR MRYSNAPNSS PSSLNETSDV FEIDQEVEDV ALCLIMLSGG VRNWSEFNSS  180
RESSDNSVIK SLHQSKEIIQ NETGIPFGDG DESFQMKKPR VDKSDPDVSA SMNVFYEKTI  240
SECKELDSGI VTDKEEKIGS EAPNDMFCRD VEFRVSKVED ESGFELYATE IEERNSGEKM  300
TFRSIEVESG KDLMEGLDLA GLGSTKLSSC KDAMFDACDA EPGGNSSNKL ICTPLNSEMS  360
DDSKKKNRYK CRICDKTFKS HQALGGHQTF HRKSNSCAIE QIENCEKSTQ SSSSPKTEAS  420
RKFLRVENVE NSVEQEINGV TSNGTSRCKV HECGICFKVF ASGQALGGHK RSHILKESET  480
RDKQPPMQIG FSDISDVLDL NLPAIHNEEA NGDVGFKSCR VGSDCKSEPL VSLVAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67450.1	6e-19	C2H2 family protein