PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297730.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 368aa MW: 41187.3 Da PI: 9.149

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v +G g+W++++++ g++R++k+c++rw +yl XP_021297730.1 14 RGLWTAEEDARILAYVSNYGIGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	50.5	4.8e-16	69	110	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+e +++++k G++ W++Ia++++ gRt++++k++w++ XP_021297730.1 69 SFTPQEEEVIINLHKHIGSR-WSLIAKHLP-GRTDNDVKNYWNT 110 79****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGRPPCCDKS NVKRGLWTAE EDARILAYVS NYGIGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLKHESF TPQEEEVIIN LHKHIGSRWS LIAKHLPGRT DNDVKNYWNT KLRKKLSKMG 120 IDPVTHKPIS QVLSDYGNIN SLPNTENLIG SFGKNLRNTL IPKIEPSSIP MGLQNNCVVM 180 KPVIEKVQDN LSAANNLSWD ILAQGQVNNR GSIQPNFFSE VTSPCSSSSS TAFSQLSSPQ 240 SSSFQASQSE ITPPSPFSWS DFLLSDPLFH DNSQQKQKHK FPGPRRSSTM TQKEISQFKA 300 NGGSDHNFNR IERQGFGVYD YSSTTMNQVN IKTDASSLPA SSFVDAILDR DSEIRSQFPE 360 ILDGSLDY

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGRPPCCDKS NVKRGLWTAE EDARILAYVS NYGIGNWTLV PKKAGLNRCG KSCRLRWTNY  60
LRPDLKHESF TPQEEEVIIN LHKHIGSRWS LIAKHLPGRT DNDVKNYWNT KLRKKLSKMG  120
IDPVTHKPIS QVLSDYGNIN SLPNTENLIG SFGKNLRNTL IPKIEPSSIP MGLQNNCVVM  180
KPVIEKVQDN LSAANNLSWD ILAQGQVNNR GSIQPNFFSE VTSPCSSSSS TAFSQLSSPQ  240
SSSFQASQSE ITPPSPFSWS DFLLSDPLFH DNSQQKQKHK FPGPRRSSTM TQKEISQFKA  300
NGGSDHNFNR IERQGFGVYD YSSTTMNQVN IKTDASSLPA SSFVDAILDR DSEIRSQFPE  360
ILDGSLDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	7e-77	MYB family protein