PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297676.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 231aa    MW: 25497.3 Da    PI: 9.1578
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297676.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-1074121454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +++ rE+ RR+++N++f eL  +l +    + +K +K+++L  Av+ +++L
  XP_021297676.1  74 SKSCREKLRRNKLNDRFLELGAILEPG---RPPKADKVAVLIDAVKMVRQL 121
                     6789**********************8...89*****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MELDSSENSN WLIDYGIPDF PPPAAGFGWP PQTILVARSN LSAAVDCSFT DSDSLKEVAS  60
RKRLKSESCY ASGSKSCREK LRRNKLNDRF LELGAILEPG RPPKADKVAV LIDAVKMVRQ  120
LRSEALKLKE SNEELQAKIK ELKAEKNELR DEKQRLKADK EKLELQVNAM STRPGFLPLP  180
SSMAAAFASQ GQAAGNKLMP YIGFPGVAMW QFMPPAAVDT SQDHVLRPPV A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-83bHLH family protein