PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297656.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 798aa    MW: 88780.9 Da    PI: 5.2972
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297656.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-2084139156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  XP_021297656.1  84 KKRYHRHTARQIQEMEAVFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 139
                     688899***********************************************998 PP
2START1541.3e-482815082206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS...............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv..............dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                     la + ++elvk+   +ep+W +    eng e l  +e ++               +++ea+r+s+vv+m++++lv  +ld + +W+e ++    +
  XP_021297656.1 281 LAMSSMDELVKMCRTNEPLWIRNN--ENGRELLNLEEHARMfpwapsnlkqrsteFRTEASRDSAVVIMNSVTLVDAFLDAN-KWTELFPsivaR 372
                     677899****************99..999999999988887999999***********************************.************ PP

                     EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE....TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
           START  79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq...lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                     a+t++v+s g     g lqlm+aelq+lsplvp R+ +f+Ry++q   + +  w+ivd  +d   ++  ++s+   +++pSg+li++++ng+s+v
  XP_021297656.1 373 AKTVQVVSAGvsgtnGSLQLMYAELQVLSPLVPtREAYFLRYCQQqnlDDETYWAIVDFPIDGFHNNL-QASFPLYRRRPSGCLIQDMPNGYSRV 466
                     *********************************************99888889*********999998.67666666****************** PP

                     EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     twveh++ +++ +h+++ ++v +g+a+ga +w+a l+rqce+
  XP_021297656.1 467 TWVEHAEIEEKPVHQIFSHFVYNGMAFGAHRWLAVLERQCER 508
                     ****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    
MYGDCQVISS MGGNVVSSET LFSSPIQNPN FNFLPFQPLP PMIPKEENGL LMRGKEEMDS  60
GSGSEQVEEK SGNEQESTEQ PPKKKRYHRH TARQIQEMEA VFKECPHPDD KQRMKLSQEL  120
GLKPRQVKFW FQNRRTQMKA QQDRSDNVIL RAENESLKNE FYRLQAELSK LVCPNCGGPA  180
VPGGISFEEL RIENARLREE LERVCAIASR YIGRPIQTMG AAPALMPPSL DLDMNIYPRH  240
FTEPMASCTE MMPVPMLPET ASFQENNLVL AEEEKTVAME LAMSSMDELV KMCRTNEPLW  300
IRNNENGREL LNLEEHARMF PWAPSNLKQR STEFRTEASR DSAVVIMNSV TLVDAFLDAN  360
KWTELFPSIV ARAKTVQVVS AGVSGTNGSL QLMYAELQVL SPLVPTREAY FLRYCQQQNL  420
DDETYWAIVD FPIDGFHNNL QASFPLYRRR PSGCLIQDMP NGYSRVTWVE HAEIEEKPVH  480
QIFSHFVYNG MAFGAHRWLA VLERQCERVA SLMARNITDL GVIPSPEARK NLMRLAQRLI  540
RTFCVNISTS SGQLWTALPD SADDTVRITT RKVTEPGQPN GLILCAVSTT WLPYPHDQVF  600
DLLRDERRRS QLEVLSNGNA LHEVAHIANG AHPGNCISLL RINVASNSSQ HVELMLQESC  660
TDRSGSLVVY STVDVDSVQL AMSGEDPSCI PLLPLGFFIT PVELIRDAGD DQGKSVPPSE  720
EASGHISGSL LTVGLQVLAS TVPSAKINLS SIAAINNHLC TTVHQITAAL SSSTAPSCPD  780
NGIGVLGSCT EPASAPEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein