PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297591.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31968 Da    PI: 6.6049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297591.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.3e-1882134456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  XP_021297591.1  82 KKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQIAIWFQNRRARWK 134
                     4568889*********************************************9 PP
2HD-ZIP_I/II128.43e-4180170191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekk+rl+ eqvk+LE+sFe  +kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdyeaLk+++dalk+en++L++++++L +el
  XP_021297591.1  80 EKKKRLNLEQVKALEKSFELGNKLEPERKIQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEALKKQFDALKAENDALQAQNKKLSAEL 170
                     69*************************************************************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MIFSIDMAFP PHAFLFQSHE DNDHLPSPTS LSSLPSCPPQ LFHGGAPFMM KRSVSFSGVD  60
KSEEVHGDDE LSDDGSHIGE KKKRLNLEQV KALEKSFELG NKLEPERKIQ LAKALGLQPR  120
QIAIWFQNRR ARWKTKQLEK DYEALKKQFD ALKAENDALQ AQNKKLSAEL LALKSKDSKE  180
ISIKKENEGS WSNGSDNSCD VNLDISRTTV ITSPVSSQLS SKHLFPSSVR PASMTQLLQG  240
SSRPDLQCLK LDQVVQEESF CHMFNGVEEQ QGFWPWAEQQ NFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01220.12e-76HD-ZIP family protein