PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297553.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

WRKY

Protein Properties

Length: 520aa MW: 56582.9 Da PI: 8.1521

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297553.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103	1.7e-32	234	291	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkversa d++++ei+Y+g Hnhek XP_021297553.1 234 EDGYNWRKYGQKPIKGCEYPRSYYKCTHLNCPVKKKVERSA-DGQITEIIYKGAHNHEK 291 8**************************************.*************85 PP
2	WRKY	107.2	8e-34	406	464	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_021297553.1 406 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 464 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MADREAEQGA RSKFSAPTRP TITLPPRPAM DGLFSSGSGL SPGPMTLVSA FFSDPDSTEH 60 RSFSQLLAGA MASPGARLPY NSMDGLFMEV GFKDGAEKSP GFKQSRPLNL AVARSPLFTV 120 PPGISPSGLL NSPGFFPLSP QSPFGISHQQ ALAQVTAQAA LAQSHVRTQA EYQTLSVAAP 180 SESLIHHPSF NPEETSQQMP PSASDPQSSA IEYSEASQSD RKNQPSVAVD KPAEDGYNWR 240 KYGQKPIKGC EYPRSYYKCT HLNCPVKKKV ERSADGQITE IIYKGAHNHE KPQPNKQGKG 300 GNDGNSVSQA NSELGSQGVA GNLNKLGEIV LTRSIPGKNN ESAQVAVEIP SESEEGCDEE 360 SREERDDDEP NPKRRNTGGE SAVVLSHKTV TESKIIVQTR SEVDLLDDGY RWRKYGQKVV 420 KGNPHPRSYY KCTSAGCNVR KHVERASTDP KAVITTYEGK HNHDVPAARN SSHTTVNNSL 480 PQPKPHKVVA EEHSLLQKMD FRNNAQGPAV LRLKEEQIRV

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MADREAEQGA RSKFSAPTRP TITLPPRPAM DGLFSSGSGL SPGPMTLVSA FFSDPDSTEH  60
RSFSQLLAGA MASPGARLPY NSMDGLFMEV GFKDGAEKSP GFKQSRPLNL AVARSPLFTV  120
PPGISPSGLL NSPGFFPLSP QSPFGISHQQ ALAQVTAQAA LAQSHVRTQA EYQTLSVAAP  180
SESLIHHPSF NPEETSQQMP PSASDPQSSA IEYSEASQSD RKNQPSVAVD KPAEDGYNWR  240
KYGQKPIKGC EYPRSYYKCT HLNCPVKKKV ERSADGQITE IIYKGAHNHE KPQPNKQGKG  300
GNDGNSVSQA NSELGSQGVA GNLNKLGEIV LTRSIPGKNN ESAQVAVEIP SESEEGCDEE  360
SREERDDDEP NPKRRNTGGE SAVVLSHKTV TESKIIVQTR SEVDLLDDGY RWRKYGQKVV  420
KGNPHPRSYY KCTSAGCNVR KHVERASTDP KAVITTYEGK HNHDVPAARN SSHTTVNNSL  480
PQPKPHKVVA EEHSLLQKMD FRNNAQGPAV LRLKEEQIRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-112	WRKY family protein