PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297403.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 279aa    MW: 31670.2 Da    PI: 9.815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12110156354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  XP_021297403.1 110 KNHKEAEKRRRERINSHLNRLRSLLPCN-----SKTDKASLLAKVVQRVKEL 156
                     58*************************8.....7************999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MLPNFIQKNP KDKNHRKQST EHALISLPTS KTWSKKTPSS YSNHTTSMQP ENSELYRFLA  60
QNGVGSYGFP ANLEFPAMQS FSSSSTYYPL EMSGVTTETT PQDRALAALK NHKEAEKRRR  120
ERINSHLNRL RSLLPCNSKT DKASLLAKVV QRVKELKQQT LELTELEAFP SETDEITVLS  180
CDYSIDGRLI FKASLCCEDR SDLLPELIEI LKSLHLKTLK AEMATLGGRI RNVLIVAADK  240
DHSIESVHFL QNALKSLLER SNSSDRSKRR RVLDHKIMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268272KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-82bHLH family protein