PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297388.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 328aa MW: 36649.7 Da PI: 7.8644

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.5	1.3e-17	37	84	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell+ ++k+ G g+W+t +++ g+ R++k+c++rw +yl XP_021297388.1 37 RGPWTPEEDELLASYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 84 89****************************99**********97 PP
2	Myb_DNA-binding	46.9	6.2e-15	95	135	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_021297388.1 95 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 135 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence
MRNPATATTP ATKLTTTTTR NNSGAKTPCC IKVGLKRGPW TPEEDELLAS YIKREGEGRW 60 RTLPKRAGLL RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN RWSLIAGRIP 120 GRTDNEIKNY WNTHLSKKLI NQGIDPRTHK PLNPQQSPSD LKAPSSSKAN RGAATIPKPN 180 NPSSSSLEET SSGQITTHKE NEYFQSNNTL HQYQTEAAIA HGFTSLLNCE DSGIEMRSNQ 240 DQGISNEEDE DINYCTDDVF SSFLNSLINE EAFANQNQMQ QQTNVTAHAD ALVSVTATTF 300 GLVQGWESPI MSSNFNQNDP NRVNDHVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-86	MYB family protein