PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021297274.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 306aa    MW: 33541.2 Da    PI: 7.1916
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021297274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.9e-16228264135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  XP_021297274.1 228 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 264
                     *****99999************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MDGIHGKNGR MHMGNDVQQP MHHHVHYAHH HHIMNGNGMV DDDDVHHAHH HQHDVDDNVG  60
GGEAEGVEAG DLPSDHPGVL SDNQGPDNGD QLTLSFQGQV YVYDSVPPEK VQAVLLLLGG  120
REVPPIMPAI PITTQNNRGL PGTPQRFSVP QRLASLLRFR EKRKERNFDK KIRYTVRKEV  180
ALRMQRNKGQ FTSSKPNTDD SVSAASSWGS NQSWGADGNG SQNQEIVCRH CGISEKSTPM  240
MRRGPEGPRT LCNACGLMWA NKGTLRDLSK AAPQTGHSSS LSKNGENVNF EADQVVRIAE  300
NVSGSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-119GATA family protein