PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297015.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 370aa MW: 41398.6 Da PI: 8.6957

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297015.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.1	6.7e-16	47	106	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_021297015.1 47 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 106 78*****************999955656446***********************98 PP
2	AP2	51.2	3.2e-16	149	200	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_021297015.1 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 200 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGKISQKTQK NSTDHEKGAT ATVAKPTTKV KRTRKSVPRD CPPQRSSVYR GVTRHRWTGR 60 YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI LNFPVSTYEN 120 ELKEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT 180 YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKRICPNH QSNPNNTKNP QQTLNGDTNS 240 TPSPNHDNIG TGFSIQPQSY STSETSMTTP PRLDSRGGGS GGGNDNSASA SSALGLLLQS 300 SKFKEMLERT SATNCPSTPP EPDLRRRSFP DDIQTYFDCQ DSSSYTEGDD IIFGHLNPFA 360 TPMFHCELDG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGKISQKTQK NSTDHEKGAT ATVAKPTTKV KRTRKSVPRD CPPQRSSVYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI LNFPVSTYEN  120
ELKEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  180
YATQEEAATA YDMAAIEYRG LNAVTNFDLS RYIKRICPNH QSNPNNTKNP QQTLNGDTNS  240
TPSPNHDNIG TGFSIQPQSY STSETSMTTP PRLDSRGGGS GGGNDNSASA SSALGLLLQS  300
SKFKEMLERT SATNCPSTPP EPDLRRRSFP DDIQTYFDCQ DSSSYTEGDD IIFGHLNPFA  360
TPMFHCELDG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79700.2	8e-98	AP2 family protein