PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296898.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 265aa MW: 30411.3 Da PI: 8.646

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G +W+ +++ g+ R++k+c++rw +yl XP_021296898.1 14 KGTWTPEEDRKLSAYVTRYGCWNWRQLPKYAGLARCGKSCRLRWMNYL 61 799***************99**********************97 PP
2	Myb_DNA-binding	54.4	3e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+e ++++++ lG++ W++Ia+ ++ gRt++++k++w++ XP_021296898.1 67 RGNYSKEEEETIIRLHESLGNR-WSAIAAQLP-GRTDNEIKNHWHTT 111 899*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MVRTPCCDKS GLRKGTWTPE EDRKLSAYVT RYGCWNWRQL PKYAGLARCG KSCRLRWMNY 60 LRPNIKRGNY SKEEEETIIR LHESLGNRWS AIAAQLPGRT DNEIKNHWHT TLKKRFKHKP 120 SVPKNGKDNP RDPIKRGTSK ETEFETKLNN HPLINSTTPP LILESSLSSP QPATSDQNSS 180 ITTDNTIVSS KDSVHTNNKA LLEAYEANSG NFWTEPFFSD SCYMSSDLLL PMMDPARYEA 240 HEFPFLDGEI LCPFGFYDQL QGLNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	7e-61	MYB family protein