PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296798.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

TALE

Protein Properties

Length: 661aa MW: 73799 Da PI: 6.6481

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296798.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27	7.4e-09	432	469	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + XP_021296798.1 432 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 469 554459******************************88 PP
2	BELL	116.8	1e-37	294	364	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 + elqk+k+kL s+leeVd+rY++y++q+++v+ssFeavag g+a +Y +lA+ka+SrhFrcL+d i++qi XP_021296798.1 294 FIELQKRKTKLFSMLEEVDRRYRHYCDQMKAVVSSFEAVAGTGAASVYSALASKAMSRHFRCLRDGIVSQI 364 579*******************************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 661 aa Download sequence
MARELCEDKS RNMVSSTGFC YSDVSSGNST MQTHLVNQIQ GFESNPEIFN LTTGMEMIGF 60 SKNLQQQGDS NTVMWKGFFN KHGTNPGPSS SKTISESTSD FYQHDFHKPE FTTGISETST 120 ENLIVGPESA PWQENRLLVD DSSLRCVFPC EGNERPSQGL SLSLSSSNPS SIGLQSFELR 180 QTSHSNHDQQ DDMRFIGSSS RDGFFGKPAN IQQQQQMIQD GFLGKAANLH HQGLFQLRSS 240 KYLGPAQELL NEFCSLGTKQ IDASKQKQIH KTKQWDDENG ASSSRKQPLY SLDFIELQKR 300 KTKLFSMLEE VDRRYRHYCD QMKAVVSSFE AVAGTGAASV YSALASKAMS RHFRCLRDGI 360 VSQIQATRKA MGEKDPVAPG TTRGETPRLR VLDQALRQQK AFQQMSMMES HPWRPQRGLP 420 ERSVSVLRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYL 480 EEIKEHENNM ASSDGATDGD DNGRPNQNPP TDQKPTPDQL VRVDSECLSS IVTNPDKNDA 540 KSAKTLQNQH LHQPQNFGTY GAMELDFSSY SHHTAGGVSY GSDNANQNFN GGGVSLTLGL 600 QQHGGTGVSL AFSPASQSSL FYPRDHIEDC QQVQYSLLDG EGQHLPYRNL MGAQLLHDLA 660 G

Sequence ? help Back to Top

Protein Sequence Length: 661 aa Download sequence

MARELCEDKS RNMVSSTGFC YSDVSSGNST MQTHLVNQIQ GFESNPEIFN LTTGMEMIGF  60
SKNLQQQGDS NTVMWKGFFN KHGTNPGPSS SKTISESTSD FYQHDFHKPE FTTGISETST  120
ENLIVGPESA PWQENRLLVD DSSLRCVFPC EGNERPSQGL SLSLSSSNPS SIGLQSFELR  180
QTSHSNHDQQ DDMRFIGSSS RDGFFGKPAN IQQQQQMIQD GFLGKAANLH HQGLFQLRSS  240
KYLGPAQELL NEFCSLGTKQ IDASKQKQIH KTKQWDDENG ASSSRKQPLY SLDFIELQKR  300
KTKLFSMLEE VDRRYRHYCD QMKAVVSSFE AVAGTGAASV YSALASKAMS RHFRCLRDGI  360
VSQIQATRKA MGEKDPVAPG TTRGETPRLR VLDQALRQQK AFQQMSMMES HPWRPQRGLP  420
ERSVSVLRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYL  480
EEIKEHENNM ASSDGATDGD DNGRPNQNPP TDQKPTPDQL VRVDSECLSS IVTNPDKNDA  540
KSAKTLQNQH LHQPQNFGTY GAMELDFSSY SHHTAGGVSY GSDNANQNFN GGGVSLTLGL  600
QQHGGTGVSL AFSPASQSSL FYPRDHIEDC QQVQYSLLDG EGQHLPYRNL MGAQLLHDLA  660
G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-139	TALE family protein