PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296764.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 266aa MW: 30250.5 Da PI: 8.6695

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296764.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.6	1.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_021296764.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	69.8	8.6e-24	82	140	9	67
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRs 67 + +++ es++ e+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe+slk++Rs XP_021296764.1 82 KPAKELESSYAEYLKLKARYEALQRTQRNLLGEDLGPLNSKELEQLERQLETSLKHVRS 140 4567899***************************************************8 PP
3	K-box	14.2	1.8e-06	166	196	70	100
K-box 70 nellleqieelqkkekelqeenkaLrkklee 100 +++ll+q+++lq+ke++l e+n+aL+ kl+e XP_021296764.1 166 TQYLLDQLSDLQNKEQMLMEANRALSIKLDE 196 799***********************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 ASMLKTLERY QKCSYGAVEV SKPAKELESS YAEYLKLKAR YEALQRTQRN LLGEDLGPLN 120 SKELEQLERQ LETSLKHVRS IRLCSAFVGS LGVDETWWLK GKLQDTQYLL DQLSDLQNKE 180 QMLMEANRAL SIKLDEISAR NQFRASWEGG EQSVSYSNQQ AQSQGLFQPL ECNPTLQIGY 240 NPVASDQIAA TTHAQQVNGF IPGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-127	MIKC_MADS family protein