PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296628.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GeBP
Protein Properties Length: 297aa    MW: 33602.1 Da    PI: 8.5005
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57380.62.3e-2570162297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +f+r+w+e Dei++LqGl++    +g s  +d+  fy+ +++sis  +s+sql+eK+rrL+kKf+  +++ ++g +ps  ++hdq  f+lsk++W
  XP_021296628.1  70 KFHRIWTEPDEISFLQGLLQS---HGLSFPKDLPIFYSNFSSSISQPYSRSQLSEKLRRLRKKFRVISSRLARGLNPSALSPHDQALFDLSKRLW 161
                     699****************87...8*9999***************************************************************** PP

          DUF573  97 g 97 
                      
  XP_021296628.1 162 S 162
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MDSTPLQPRP QPQPQPLKPS ASKLPIKRKA PFPQHHHQFL TPIPQPLAFS PLDHSPPSSS  60
APKPRLPPFK FHRIWTEPDE ISFLQGLLQS HGLSFPKDLP IFYSNFSSSI SQPYSRSQLS  120
EKLRRLRKKF RVISSRLARG LNPSALSPHD QALFDLSKRL WSPEFSSTSP FGKSSSGFNL  180
GFSLDHENNG IGDGNDFEDC DLIENDGELK MNEVNVNCDF GGGRDEVVND GQIDGIVAKS  240
VLDVFDECFK EVGMVFGKQG LVWLDTMERR WKEQRISELD VLGRRLRLVI ENSLTRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.13e-16GeBP family protein