PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296601.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 858aa MW: 96886.2 Da PI: 6.7915

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296601.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.9	2.2e-15	65	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+++GFs+ + + k+ k +g i++ +f Cs+e +++++ ++ C+a++++++++ gkw+ tk++++HnH+++ XP_021296601.1 65 SFYDGYARRLGFSTHVGQFKRAKPDGPIVTWDFACSREVFKRKNIES--------------CNAMFRIEQRDGGKWVATKFVEDHNHSMV 140 5**************************************998877..............************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MDVGGGKGDN VTGLNVLSNK GGDNNWDVTE QSPEIEVVVN QDDDGAGGGK PFVGMEFDSE 60 DAGKSFYDGY ARRLGFSTHV GQFKRAKPDG PIVTWDFACS REVFKRKNIE SCNAMFRIEQ 120 RDGGKWVATK FVEDHNHSMV TPSKVHYLRP RRHFAGATKN VPETLDATTD VFVSTDGNHI 180 SYEANRVRSA SSVEPNRLVR NMMPVGYVRP SSQRRMLGRD AQNLLNYFKK MQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RTAYNYFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQTVL 300 FGCALLLDES ESSFAWLFKT WLSAMNDRPP VSITTDQDRA IQAAVSQVFP ETRHCICRWH 360 ILREGQERLA HIYLVHPSFY GELYGCINFS EAIEDFESSW SALLDKYDLH KNEWLQAVYN 420 ARQQWAPVYF RGTFFATLSS NQGVSSFFDG YVNQQTTIPL FFKQYERALE HSLEKEIEAD 480 CDTICTTPVL KTPSPMEQQA ANLYTKKVFS KFQDELVETF VYTANKIEGD GIASKYRVAK 540 YEHDHKAYFV TLNVSEMKAS CSCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRN 600 AKSWVGLDDQ HADPQGIETL TTRFNSLCQE AFKLAEEGAV APETYNTAIS ALREAGKKVA 660 FVKKNVAKVT LPSSHNSGNS HEEGSKKTAS PVSEMVPSLW PWQDAVSPRF NLNDVGAPLA 720 DLNQPSMVPV SIHRDGGHPD STVVLTCFKS MTWVIENKNA MEAGKVAVIN LKLHDYGKNP 780 SGETEVQFRL TRITLEPMLR SMAYISQQLS TPVNRVAVIN LKLQDTKTTS GETEVKFQVS 840 RDTLGSMLRS MAYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MDVGGGKGDN VTGLNVLSNK GGDNNWDVTE QSPEIEVVVN QDDDGAGGGK PFVGMEFDSE  60
DAGKSFYDGY ARRLGFSTHV GQFKRAKPDG PIVTWDFACS REVFKRKNIE SCNAMFRIEQ  120
RDGGKWVATK FVEDHNHSMV TPSKVHYLRP RRHFAGATKN VPETLDATTD VFVSTDGNHI  180
SYEANRVRSA SSVEPNRLVR NMMPVGYVRP SSQRRMLGRD AQNLLNYFKK MQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RTAYNYFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQTVL  300
FGCALLLDES ESSFAWLFKT WLSAMNDRPP VSITTDQDRA IQAAVSQVFP ETRHCICRWH  360
ILREGQERLA HIYLVHPSFY GELYGCINFS EAIEDFESSW SALLDKYDLH KNEWLQAVYN  420
ARQQWAPVYF RGTFFATLSS NQGVSSFFDG YVNQQTTIPL FFKQYERALE HSLEKEIEAD  480
CDTICTTPVL KTPSPMEQQA ANLYTKKVFS KFQDELVETF VYTANKIEGD GIASKYRVAK  540
YEHDHKAYFV TLNVSEMKAS CSCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILKRWTRN  600
AKSWVGLDDQ HADPQGIETL TTRFNSLCQE AFKLAEEGAV APETYNTAIS ALREAGKKVA  660
FVKKNVAKVT LPSSHNSGNS HEEGSKKTAS PVSEMVPSLW PWQDAVSPRF NLNDVGAPLA  720
DLNQPSMVPV SIHRDGGHPD STVVLTCFKS MTWVIENKNA MEAGKVAVIN LKLHDYGKNP  780
SGETEVQFRL TRITLEPMLR SMAYISQQLS TPVNRVAVIN LKLQDTKTTS GETEVKFQVS  840
RDTLGSMLRS MAYIREQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1 family protein