PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296587.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 564aa MW: 64866.3 Da PI: 7.4104

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296587.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.8e-30	119	204	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+++r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea XP_021296587.1 119 RWPRQETLTLLDIRSRLDSKFKEANQKGPLWDEVSRIMaEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 204 8***********************************999*************************97..66678*****85 PP
2	trihelix	65.4	1.2e-20	417	502	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt++e+ Li++r++ e r+++ g +k+ lWee+ +km g+er +++Ckekw+n+++++ ++ kkr +e+ ++ yf+ l+ XP_021296587.1 417 RWTEHEISSLIQLRKSFEPRFQEaGYSKESLWEEIEAKMVGLGYERDAVECKEKWDNMQMYFNMTTGCYKKR-KEDYRSSNYFQPLD 502 8*******************8467***************************************99998.67777899999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MEMGDQYGLP DLRRFLARRT HFPDHTQPSE PYFTHTHRNM APLAPYHEAF MVSNGMAVPS 60 SLIRFGHDHF AGASATTTAI AASASSAAAS GPCAALFGVE MESSGIGWSL GNIEGGNSRW 120 PRQETLTLLD IRSRLDSKFK EANQKGPLWD EVSRIMAEEH GYQRSGKKCR EKFENLYKYY 180 KKTKEGKAGR QDGKNYRFFR QLEALYGETS NQSSLLETNL AQRTLLCQTP NNTMNQENQE 240 FLQEQKLSES LTFSNASEFE TSSSANNDED LSAIAFMMKQ SMVEKQKSIN ESGSSSRVKK 300 GWKTKVKDFV ESQMKKLIYS QDVWMERMLK AIEDKERERV SKEEEWRRQE AARFDKEHEF 360 WAKERTWVEA RDAALLDVLK KFTAGKGLEV SSSAEAPVIT ETHSHNKNQQ DAINTNRWTE 420 HEISSLIQLR KSFEPRFQEA GYSKESLWEE IEAKMVGLGY ERDAVECKEK WDNMQMYFNM 480 TTGCYKKRKE DYRSSNYFQP LDSCDGQENN TNTVKQRDSP SNSYVGTHQQ LHDTNSFQIA 540 VRQGDQRLWD RYGLKLGKGK NQQV

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MEMGDQYGLP DLRRFLARRT HFPDHTQPSE PYFTHTHRNM APLAPYHEAF MVSNGMAVPS  60
SLIRFGHDHF AGASATTTAI AASASSAAAS GPCAALFGVE MESSGIGWSL GNIEGGNSRW  120
PRQETLTLLD IRSRLDSKFK EANQKGPLWD EVSRIMAEEH GYQRSGKKCR EKFENLYKYY  180
KKTKEGKAGR QDGKNYRFFR QLEALYGETS NQSSLLETNL AQRTLLCQTP NNTMNQENQE  240
FLQEQKLSES LTFSNASEFE TSSSANNDED LSAIAFMMKQ SMVEKQKSIN ESGSSSRVKK  300
GWKTKVKDFV ESQMKKLIYS QDVWMERMLK AIEDKERERV SKEEEWRRQE AARFDKEHEF  360
WAKERTWVEA RDAALLDVLK KFTAGKGLEV SSSAEAPVIT ETHSHNKNQQ DAINTNRWTE  420
HEISSLIQLR KSFEPRFQEA GYSKESLWEE IEAKMVGLGY ERDAVECKEK WDNMQMYFNM  480
TTGCYKKRKE DYRSSNYFQP LDSCDGQENN TNTVKQRDSP SNSYVGTHQQ LHDTNSFQIA  540
VRQGDQRLWD RYGLKLGKGK NQQV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	1e-113	Trihelix family protein