PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296580.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MIKC_MADS

Protein Properties

Length: 237aa MW: 27335.9 Da PI: 7.1665

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.4	2.5e-30	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gkl e+ XP_021296580.1 9 ERIENKINRQVTFSKRRNGMLKKAYELSVLCDAEVALIIFSSRGKLSEFG 58 69**********************************************95 PP
2	K-box	80.1	5.5e-27	82	170	11	99
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + ++++l+qe+ +Lk++ e+Lq +qR+llGe+Le+Ls+keL ++e+q++++l++ R+kK +llle +eel+k+e el++enk+L+++le XP_021296580.1 82 ADETQTLYQEVLRLKAKHESLQLSQRRLLGEELEELSMKELYNIEKQVDRALTQARQKKVQLLLERMEELRKREVELEDENKQLKSQLE 170 56799********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MGRGKVVLER IENKINRQVT FSKRRNGMLK KAYELSVLCD AEVALIIFSS RGKLSEFGSS 60 TSVSQTLEKY WQHRYTSDVH FADETQTLYQ EVLRLKAKHE SLQLSQRRLL GEELEELSMK 120 ELYNIEKQVD RALTQARQKK VQLLLERMEE LRKREVELED ENKQLKSQLE LEQSFQAAQG 180 LGDPNIEAGY EDNIPPSQAN HAHLPSLPQG YHQFIPQERA SEARLDKGAN KPTAGWL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	5e-43	MIKC_MADS family protein