PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296516.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 243aa    MW: 26863.6 Da    PI: 9.7336
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296516.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.85.9e-1173124255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     + + +e+Er+RR+++ + + +Lr+llP  +    ++K   ++   +Av+YIk+L+
  XP_021296516.1  73 KIMRKEIERQRRQQMAKLYGKLRSLLPLeS---IKGKRAVSDHMNEAVNYIKYLK 124
                     66789***********************66...9*******************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MFPSHQSDGF LYEISDIPHH QDLMQQNLTI SGEASAGGST LTQRMAKGKR HKKLAAAANS  60
NDGNAAANND AKKIMRKEIE RQRRQQMAKL YGKLRSLLPL ESIKGKRAVS DHMNEAVNYI  120
KYLKKKIQEL SVKRDKLKKL SNLTAFDQGS ASSSDNSSLI NCVAVHPYGG GVEIVISSGF  180
GDESWHLSAM MQVIRAEELD VVRCISSQTN EGFLHTIQSE VSDPAHRLDL PGLKSKLNDL  240
ISF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140DKLKKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.19e-38bHLH family protein