PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296470.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARR-B
Protein Properties Length: 765aa    MW: 83193 Da    PI: 6.6334
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.22.4e-25233286155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++++Wt+ LH++F+ea++q+ G +kA+Pk+ile+m+v gLt+e+v+SHLQkYR+
  XP_021296470.1 233 KAKVVWTNSLHNKFLEALRQI-GLDKAVPKKILEIMNVSGLTRENVASHLQKYRI 286
                     6799*****************.********************************6 PP
2Myb_DNA-binding316e-10236285248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT  ++ ++++a +q G +   +k+I + m+  g+t++++ s++qky+
   XP_021296470.1 236 VVWTNSLHNKFLEALRQIGLDkaVPKKILEIMNvSGLTRENVASHLQKYR 285
                      68***********************************************7 PP
3Response_reg678.6e-237115723109
                     CEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  23 yeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     ++ va+++++ +al +l++k  +Dl+++D+ mpgm+G+el ++i++e  ++p+i++++ ++e+ +l+ l+ Ga  f++Kp++p++l +
  XP_021296470.1  71 MMMVATVKSPADALSTLRAKPgIDLVVTDLHMPGMNGIELQRQINREF-RVPVIIMSSDEQESVMLQSLEEGAVFFIAKPVKPDDLKN 157
                     679*****************99**********************9988.9***********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    
MASKRSISTE YSNPINSLLK ITILVVDDDS TSLAIVSAML KEWRYEGIRK IFCLGSLYFY  60
DLSRMXVDIV MMMVATVKSP ADALSTLRAK PGIDLVVTDL HMPGMNGIEL QRQINREFRV  120
PVIIMSSDEQ ESVMLQSLEE GAVFFIAKPV KPDDLKNVWQ YAIAAKKGKS VVIEEIASTE  180
GEAPSARKVS TDEVRSVASV KDDKNNAKKG TKRKASRKSK DDQEEVIGSA PKKAKVVWTN  240
SLHNKFLEAL RQIGLDKAVP KKILEIMNVS GLTRENVASH LQKYRIFLKR VAERGCFASK  300
AFVERMLRSS FASGHPLLLK TAQEYARLAE LQQKRGLTFQ PENGGCVSYQ NAHNAATHGS  360
VLFPYQNASS SNSAQRHACG QSRLLLGNQA NNKRLVSGNT NPLYQGNHLG FANGSNFSLN  420
GSLTNATNGL MNGANSRHAY QQQIEARQNF HSAGFSSQFR FGSSSLHSSN STLGTGNVGS  480
ISTSYPTLNS SCSNNNSYAR VRLASDGQLI GMGQTRLNGC YGSMNGTYSE EMNVAANGNQ  540
TFGFMGQRGS SSAGLNNGAN QVSPANTADN ASMFPGLDNN GGAKHYKSGH LMNNAPTFDN  600
ITPQQLGDGT LSDLLLESKN YQFPCQQQDG GDGVQSPDFL SSSIFQEIFP SLEELLNXDF  660
SESLSLEDTA PQNGQALERQ VQSDDGQLMN TSVGGSAYPS NESYPTNFNQ STNQQQSEGD  720
EVTISEFSSV FQVNNAPASG DNASDNQNWG DDFVDSLFSF GSHFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.13e-60ARR-B family protein