PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296446.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 555aa MW: 60232.2 Da PI: 4.7458

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296446.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.6e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l+++vk++G g+W+++ ++ g+ R++k+c++rw ++l XP_021296446.1 39 KGPWTSAEDAILIEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 86 79******************************************9986 PP
2	Myb_DNA-binding	53.9	4.1e-17	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++l++++++++G++ W++ a++++ gRt++++k++w++ XP_021296446.1 92 KGAFTQEEEQLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MSHTKNERED GMLSKDPAES PLADDGNCGG AGGGVVLKKG PWTSAEDAIL IEYVKKHGEG 60 NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES HSTSALNGGD KGPHDIMQNN 180 SYEMPDVIFD SLKANQSVLP YVPELPDIST SSMLMKGLGS SQYCSFMPPT IHRQKRLRES 240 TAFFPGYTGT VKNECPLFDQ FQDDMSDKAA QSFGVSFPIE PDPTAKNSQS FGVFPGSHAL 300 TNGNFSASES SLEAAKLELP SLQYPETELG NWGTISCPPP LLESVDAFIQ SPPPTSGVES 360 DSLSPRNSGL LDALLHEAKT LSSAKNHASD KSSNSSTPGD IAESSNFNIC ETEWENCGEP 420 LSPMGHSATS LFSECISASG SSLDEQPPAE TLTESYVKSE TADHVLTLEI QKEAPIRLDS 480 TCPDTLLASN WLEQGCVYGK DQTIMSDAMA TLLGDDLSSE YKNMAAGTSI SSQAWGLGSC 540 AWNNMPAVCQ ISELP

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MSHTKNERED GMLSKDPAES PLADDGNCGG AGGGVVLKKG PWTSAEDAIL IEYVKKHGEG  60
NWNAVQKHSG LFRCGKSCRL RWANHLRPNL KKGAFTQEEE QLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRR QRAGLPLYPP EVCLQALQES HSTSALNGGD KGPHDIMQNN  180
SYEMPDVIFD SLKANQSVLP YVPELPDIST SSMLMKGLGS SQYCSFMPPT IHRQKRLRES  240
TAFFPGYTGT VKNECPLFDQ FQDDMSDKAA QSFGVSFPIE PDPTAKNSQS FGVFPGSHAL  300
TNGNFSASES SLEAAKLELP SLQYPETELG NWGTISCPPP LLESVDAFIQ SPPPTSGVES  360
DSLSPRNSGL LDALLHEAKT LSSAKNHASD KSSNSSTPGD IAESSNFNIC ETEWENCGEP  420
LSPMGHSATS LFSECISASG SSLDEQPPAE TLTESYVKSE TADHVLTLEI QKEAPIRLDS  480
TCPDTLLASN WLEQGCVYGK DQTIMSDAMA TLLGDDLSSE YKNMAAGTSI SSQAWGLGSC  540
AWNNMPAVCQ ISELP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-135	MYB family protein