PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021296421.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 383aa MW: 42104.6 Da PI: 5.5944

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021296421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.1	2.8e-06	21	61	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 r+C+++++ + +C+ ++ +lC+ C H H+ XP_021296421.1 21 RVCDTCHSAACTVYCRADSAYLCARCDARVHAAnrvasrHE 61 79****99***************99995555666676 PP
2	zf-B_box	32	2.6e-10	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ + C+ + lC +C e+H+ H++vp+ XP_021296421.1 63 VWVCEACERAPAAFLCKADAASLCTTCDAEIHSAnplarrHQRVPI 108 689***************************668999999997 PP
3	CCT	70.2	5.3e-24	314	357	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k+a XP_021296421.1 314 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRA 357 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
MLKEETSDGG GGGGSSNNWA RVCDTCHSAA CTVYCRADSA YLCARCDARV HAANRVASRH 60 ERVWVCEACE RAPAAFLCKA DAASLCTTCD AEIHSANPLA RRHQRVPILP ISGCVYGPSA 120 TDLGGRKIAS AAETEDGFMD PEGDETIAEE DEDEAASWLL LNPGKNSTNQ NNGYLFGGEV 180 DDYLDLVEYN SSVENHITDH YNQQQQHYSV PNKSYGGDSV VPIQSGEAKD HLQQQQHQQQ 240 SLQFGLDYES SKAAYSYNGS VSHSVSLSSV DVGIVPESTI SDISISHPRP PKGTIDLFSG 300 PPIQMPTQLT PMDREARVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK GRFAKRADVE 360 VEVDQMFSTT LMTETGYGIV PSF

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

MLKEETSDGG GGGGSSNNWA RVCDTCHSAA CTVYCRADSA YLCARCDARV HAANRVASRH  60
ERVWVCEACE RAPAAFLCKA DAASLCTTCD AEIHSANPLA RRHQRVPILP ISGCVYGPSA  120
TDLGGRKIAS AAETEDGFMD PEGDETIAEE DEDEAASWLL LNPGKNSTNQ NNGYLFGGEV  180
DDYLDLVEYN SSVENHITDH YNQQQQHYSV PNKSYGGDSV VPIQSGEAKD HLQQQQHQQQ  240
SLQFGLDYES SKAAYSYNGS VSHSVSLSSV DVGIVPESTI SDISISHPRP PKGTIDLFSG  300
PPIQMPTQLT PMDREARVLR YREKKKTRKF EKTIRYASRK AYAETRPRIK GRFAKRADVE  360
VEVDQMFSTT LMTETGYGIV PSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-131	CO-like family protein