PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021296342.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family RAV
Protein Properties Length: 315aa    MW: 35950.6 Da    PI: 9.7342
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021296342.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.3e-153583155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a+++++g
  XP_021296342.1 35 SKFKGVVSQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAKAYDIAALRFRG 83
                    79****8888.8*********3.....5*************************98 PP
2B389.82.1e-28165253185
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+kv tpsdv+k++r+v+pk++a+++    gg+  +++ l +ed  g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD v F ++
  XP_021296342.1 165 FEKVATPSDVGKLNRIVIPKQHADKYfpmqGGIVSKGVLLNFEDNMGKVWRFRYCYWTSSQSYVLTKGWTRFVKEKKLKAGDAVSFWRS 253
                     89****************************7788899*************************************************854 PP
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    
MATYSSFAAR KSPENSYQSS ERGIEAVGPQ KLPSSKFKGV VSQPNGRWGA QIYEKHQRVW  60
LGTFNEEEEA AKAYDIAALR FRGQNAFTNF KPSVHTDEDD FEQYFLASHS KEEIVDMIRK  120
RTYTNELEHC KYNYACHDTW KRIKGNGFSS LPGFDPFEGA REYLFEKVAT PSDVGKLNRI  180
VIPKQHADKY FPMQGGIVSK GVLLNFEDNM GKVWRFRYCY WTSSQSYVLT KGWTRFVKEK  240
KLKAGDAVSF WRSLGPNTKL FIGHKAGNVS NLEELPNRVV PGENSGVVRL FGVNILETNM  300
AVVNHKSKNK EKSLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-104RAV family protein