PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295904.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 590aa MW: 66312.3 Da PI: 4.5346

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.4e-52	9	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yLk+kv +k+ +++i+ +diy++ePwdLp k k+k+++ ewyfFs dkky +g+r+nrat++gyWk+tgkd+++ XP_021295904.1 9 LAPGFRFHPTDEELVRYYLKRKVLNKP--SFDAISVIDIYRSEPWDLPdKsKLKSRDLEWYFFSALDKKYGNGSRTNRATERGYWKTTGKDRPIR 101 579*********************9..3478**********95347777888********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLv++kgrap+ge+t+Wvmheyrl XP_021295904.1 102 F-RERVVGMKKTLVYHKGRAPRGERTNWVMHEYRL 135 9.999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MSRDSATSLA PGFRFHPTDE ELVRYYLKRK VLNKPSFDAI SVIDIYRSEP WDLPDKSKLK 60 SRDLEWYFFS ALDKKYGNGS RTNRATERGY WKTTGKDRPI RFRERVVGMK KTLVYHKGRA 120 PRGERTNWVM HEYRLADEEL EKSGIQQDAF VLCRVFQKSG SGPKNGEQYG APFIEEEWEN 180 DDTIFVPGQH AVAVDEEVAN YDAFVEVNDF DENLDIGNPS ENAVLPQNFY HGESSNHVEY 240 SREFSEDYQK PPGNMPENAL LPSNFYYGES SNHAEHSREF TEDCQKPTVI HSTESDSKPH 300 HEYVFSDLPQ PNGIGTVAKP VKDEYVVEPI ENVNPADDNY LLDEPYLDVT DYLPANDGYF 360 LEANDLSNPI DPESDVFDLE EYLTFVDADD QPLAFDSDQM VGSEIPVSHQ EPLAQTHSNG 420 GTEQVSNASE HLEELGNSDA SSSKQELVPT KFEPGTKYPF LKQASHMLGS FPAPPAFASE 480 FPSKDAALKL NSAAQASSSV HVVAGMIRIT NMTSSSNQLD WSHGKNGNVN IVLSFSLPQG 540 DVNSSNFLPM ASLLSGKTGS VLARGWFFLM FLWVLIITVS LKFGTCIYTR

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MSRDSATSLA PGFRFHPTDE ELVRYYLKRK VLNKPSFDAI SVIDIYRSEP WDLPDKSKLK  60
SRDLEWYFFS ALDKKYGNGS RTNRATERGY WKTTGKDRPI RFRERVVGMK KTLVYHKGRA  120
PRGERTNWVM HEYRLADEEL EKSGIQQDAF VLCRVFQKSG SGPKNGEQYG APFIEEEWEN  180
DDTIFVPGQH AVAVDEEVAN YDAFVEVNDF DENLDIGNPS ENAVLPQNFY HGESSNHVEY  240
SREFSEDYQK PPGNMPENAL LPSNFYYGES SNHAEHSREF TEDCQKPTVI HSTESDSKPH  300
HEYVFSDLPQ PNGIGTVAKP VKDEYVVEPI ENVNPADDNY LLDEPYLDVT DYLPANDGYF  360
LEANDLSNPI DPESDVFDLE EYLTFVDADD QPLAFDSDQM VGSEIPVSHQ EPLAQTHSNG  420
GTEQVSNASE HLEELGNSDA SSSKQELVPT KFEPGTKYPF LKQASHMLGS FPAPPAFASE  480
FPSKDAALKL NSAAQASSSV HVVAGMIRIT NMTSSSNQLD WSHGKNGNVN IVLSFSLPQG  540
DVNSSNFLPM ASLLSGKTGS VLARGWFFLM FLWVLIITVS LKFGTCIYTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-166	NAC family protein