PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295853.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 341aa    MW: 37144.8 Da    PI: 7.127
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17250283134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  XP_021295853.1 250 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 283
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MIGPTNFIDE IDCGSFFDHI DDLLDFPNED VEAGLSASDS AVNAAAFPSI WTTHSESLPC  60
SDSVFSNNSA SDLSAELSVP YEDIVQLEWL SNFVDDSQCG ASLTIKKEES SSITKDSSQH  120
QFQTSSPVSV LESSSSCSGE KTLPRSPEMA APGRRGRARS KRPRPTTFNP RPAIQLISPT  180
SSVNENDIPQ PFVVPKAPSD SENYAESRLL IKIPRQVNPE HKKKKKIKLS LPAAPADNNQ  240
NSAGQAVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPSL  300
HSNSHKKVLE MRNKVGVAPT TMVTSSPELI PNKSNPALDF M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KRPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-44GATA family protein