PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021295736.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26254.9 Da PI: 4.9272 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.5 | 3.6e-18 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i ++s r+ tf R++g+lKKA+ELS+LC++e++vii+s+ XP_021295736.1 11 IVDDSARKATFRIRKKGLLKKASELSTLCGIEACVIIYSPY 51 778999*********************************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MTPRKEKFSY IVDDSARKAT FRIRKKGLLK KASELSTLCG IEACVIIYSP YDTQPVVWPS 60 PEGAQSVLSD FKKVPTMDQS KKMMNQESFL RQRIEIANQQ LQRQSKDNRE KEITQVMFQC 120 LAGQGLESLN MKDLNDLGRL LEQNLEDIDK RIDTLTKASH SQGSVAAASA TMATPEVMLK 180 SGEKVQAERP EREASTETED WEQMIDELLH SPEDVGLGLV LPFGDNNPTV FFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-59 | M-type_MADS family protein |