PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295704.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARR-B
Protein Properties Length: 556aa    MW: 61505.3 Da    PI: 6.7005
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295704.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.13.5e-27318371256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      +++Wt+eLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  XP_021295704.1 318 LKVDWTHELHKKFVQAVDQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 371
                     5899****************.********************************96 PP
2Myb_DNA-binding40.94.8e-13320369248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT e+++++v+av qlG +   +++I + m  +g+t+ ++ s++qky+
   XP_021295704.1 320 VDWTHELHKKFVQAVDQLGVDqaIPSRILELMKvEGLTRHNVASHLQKYR 369
                      57***********************************************7 PP
3Response_reg25.18.6e-10201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d++ + +  +++ le  +y +v ++ +  eal  +  +   +++ ++ ++ ++ +G+  +k +++++ +lp ++ +     +++ +++ +G
  XP_021295704.1  20 VLLLDEDSNSAAEIKSKLEAMDY-IVYTFCNQNEALSAVSSRPesFHVAIVEVSTSNNNGS--FKFLETAK-DLPTVMTSNIHCISTMMKCIALG 110
                     7899999999999**********.***************666666*************996..67777766.899999998888*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++++l++
  XP_021295704.1 111 AVEFLRKPLSEDKLRN 126
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    
MVCTANDISA WKDFPKGLRV LLLDEDSNSA AEIKSKLEAM DYIVYTFCNQ NEALSAVSSR  60
PESFHVAIVE VSTSNNNGSF KFLETAKDLP TVMTSNIHCI STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAAG KDLSESLKPG KESVFSMLHL QMENGIPMNE DSDKTEDASV  180
VHEIDREPSP GSDKYPAPST PQLKQGERLL DDGDCQEHTN CSTEKESGEQ DGESKSVETT  240
SGNAIAEVTA PIGQPQGSRV SDVKGVADLV DGNKGESTVH SHPQNRVNRK DSQASAEKPS  300
TVSGLHSSCL NKANRKKLKV DWTHELHKKF VQAVDQLGVD QAIPSRILEL MKVEGLTRHN  360
VASHLQKYRM HRRHILPKED DPRWPQRDQT QRSCYPHKPI MAFPPYHSNH VVPVGPLYPM  420
WGAPPHPANI QMWGSPGYPP WQPTESWHWK PYPGFQADAW GCPVMHPPPG YCSAFTQNAS  480
GFHCSSTMDN RSGMPHNSVE HQPAEEVIDK VVKEAINKPW LPLPLGLKPP STEGVLAELS  540
RQGISAVPPH INGSNP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-153ARR-B family protein