PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295683.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARR-B

Protein Properties

Length: 557aa MW: 61633.4 Da PI: 6.7005

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295683.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	79.9	2.9e-25	318	372	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 +++Wt+eLH++Fv+av+qL G ++A+P++ilelmkv+gLt+++v+SHLQ kYR++ XP_021295683.1 318 LKVDWTHELHKKFVQAVDQL-GVDQAIPSRILELMKVEGLTRHNVASHLQqKYRMH 372 5899**************.************************54986 PP
2	Myb_DNA-binding	35.8	1.9e-11	320	367	2	46
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 WT e+++++v+av qlG + +++I + m +g+t+ ++ s++q+ XP_021295683.1 320 VDWTHELHKKFVQAVDQLGVDqaIPSRILELMKvEGLTRHNVASHLQQ 367 57********************************************96 PP
3	Response_reg	25.1	8.7e-10	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + + +++ le +y +v ++ + eal + + +++ ++ ++ ++ +G+ +k +++++ +lp ++ + +++ +++ +G XP_021295683.1 20 VLLLDEDSNSAAEIKSKLEAMDY-IVYTFCNQNEALSAVSSRPesFHVAIVEVSTSNNNGS--FKFLETAK-DLPTVMTSNIHCISTMMKCIALG 110 7899999999999********.***********666666*********996..67777766.899999998888******* PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ XP_021295683.1 111 AVEFLRKPLSEDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MVCTANDISA WKDFPKGLRV LLLDEDSNSA AEIKSKLEAM DYIVYTFCNQ NEALSAVSSR 60 PESFHVAIVE VSTSNNNGSF KFLETAKDLP TVMTSNIHCI STMMKCIALG AVEFLRKPLS 120 EDKLRNIWQH VVHKAFNAAG KDLSESLKPG KESVFSMLHL QMENGIPMNE DSDKTEDASV 180 VHEIDREPSP GSDKYPAPST PQLKQGERLL DDGDCQEHTN CSTEKESGEQ DGESKSVETT 240 SGNAIAEVTA PIGQPQGSRV SDVKGVADLV DGNKGESTVH SHPQNRVNRK DSQASAEKPS 300 TVSGLHSSCL NKANRKKLKV DWTHELHKKF VQAVDQLGVD QAIPSRILEL MKVEGLTRHN 360 VASHLQQKYR MHRRHILPKE DDPRWPQRDQ TQRSCYPHKP IMAFPPYHSN HVVPVGPLYP 420 MWGAPPHPAN IQMWGSPGYP PWQPTESWHW KPYPGFQADA WGCPVMHPPP GYCSAFTQNA 480 SGFHCSSTMD NRSGMPHNSV EHQPAEEVID KVVKEAINKP WLPLPLGLKP PSTEGVLAEL 540 SRQGISAVPP HINGSNP

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MVCTANDISA WKDFPKGLRV LLLDEDSNSA AEIKSKLEAM DYIVYTFCNQ NEALSAVSSR  60
PESFHVAIVE VSTSNNNGSF KFLETAKDLP TVMTSNIHCI STMMKCIALG AVEFLRKPLS  120
EDKLRNIWQH VVHKAFNAAG KDLSESLKPG KESVFSMLHL QMENGIPMNE DSDKTEDASV  180
VHEIDREPSP GSDKYPAPST PQLKQGERLL DDGDCQEHTN CSTEKESGEQ DGESKSVETT  240
SGNAIAEVTA PIGQPQGSRV SDVKGVADLV DGNKGESTVH SHPQNRVNRK DSQASAEKPS  300
TVSGLHSSCL NKANRKKLKV DWTHELHKKF VQAVDQLGVD QAIPSRILEL MKVEGLTRHN  360
VASHLQQKYR MHRRHILPKE DDPRWPQRDQ TQRSCYPHKP IMAFPPYHSN HVVPVGPLYP  420
MWGAPPHPAN IQMWGSPGYP PWQPTESWHW KPYPGFQADA WGCPVMHPPP GYCSAFTQNA  480
SGFHCSSTMD NRSGMPHNSV EHQPAEEVID KVVKEAINKP WLPLPLGLKP PSTEGVLAEL  540
SRQGISAVPP HINGSNP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-151	ARR-B family protein