PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295648.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 1697aa MW: 184158 Da PI: 5.1472

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.2e-09	768	809	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia+ + ++t +c+++++k XP_021295648.1 768 PWTSEEKEIFMDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 809 8***************99.*****.*********98 PP
2	Myb_DNA-binding	32.6	1.9e-10	988	1027	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ XP_021295648.1 988 WTDEEKSVFIQAVSSYGKD-FAMISRCVG-TRSRDQCKVFFS 1027 ***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1697 aa Download sequence
MGPLENSLVG DPLTCVVHLG SWHLFAEENG GHGYMPSRSG DKILDDENCR QSVSRGDGKY 60 SRNSSRENNR GSYSQRDWRA HSWEMSNGSP NTPGRPHDVN NEQRSVDDML TYPSHAHSDF 120 VNTWDQLHKE QHDNKTSGVN GLGTGLRCER ENSVGSMDWK PLKWSRSGSL SSRGSGFSHS 180 SSSKSLGGVD SGEGKPELQQ KNLTPVQSPS GDAAACVTSA APSDETMSRK KPRLGWGEGL 240 AKYEKKKVEG PDTSMNRGVA TISVGNTEPN NSLSSNLADK SPRVLGFSDC ASPATPSSVA 300 CSSSPGVEEK SFGKAANIDN DISNLCGSPS LGSQNQLEGP SFNLEKVDMN SIINMGSSLV 360 DLLQSDDPST VDSSFVRSTA LNKLLLWKGD VLKALEMTES EIDSLENELK SLKANSGSRY 420 PCPATSSSLP VEENGRACEE LEAISSMIPR PAPLKIDPCG DALEEKVPLC NGVLEEVNAD 480 AKDGDLDSPG TATSKFVEPS SLDKAVSPSD VKLHECSGDL GTAQLTTMGE VNLAPGSNND 540 GTGVPNSGEG SGLEKIDNDV HVPEPSSTVA DTENMMYDVI LATNKELANS ASKVFNNLLP 600 KDWCSIEISE IANGACWQTD SLIREKIVKR KQCVRFKERV LTLKFKAFQH AWKEDIHSPS 660 IRKYRAKSQK KYELSLRSTL GGCQKHRSSI RSRLTSPAGN LSLEPNVEMI NFVSKLLSDS 720 HVRLYRNALK MPALFLDEKE KQVSRFISSN GLVEDPCAVE KERTLINPWT SEEKEIFMDK 780 LAAFGKDFRK IASFLDHKTT ADCVEFYYKN HKSECFEKTK KKLDLSKQGK STANTYLLTS 840 GKKWSRELNA ASLDVLGEAS VIAAHAESGM RNRQTSSGRI FLGGRFDSKA SRVDDSIVER 900 SSSFDVIGND RETVAADVLA GICGSLSSEA MSSCITSSAD PGESYQREWK CQKVDSVVKR 960 PSTSDVIQNI DDDTCSDESC GEMDPADWTD EEKSVFIQAV SSYGKDFAMI SRCVGTRSRD 1020 QCKVFFSKAR KCLGLDLIQP RTRNMGTPMS DDANGGGSDV EDACVLESSV VCSDKLGSKV 1080 EDLPSTIVSM NVDESDPTGE VSLQTDLNVL EENNGALLNH RDSEVVETMV SDVGQPEPIC 1140 ESGGDMNVGS NKTESVEVQK SVALANLNAG RKQAAEQGVT VAVPASVREA VDPCPPSLVA 1200 VVEPISVAGC APEGFGDDLK AQETSLGKNG LDEPDIKCSA ETSSQSISRL DSNKTSDESI 1260 DKSSCSGFSV NTKGLHRDPL DLDSAEKASA VLLPKKNSSA TDSALHDSDA LQCEKVCNQD 1320 RLSSTLDYQE NEDKEAHKSV SGDESDRLSG KPVVNLTESY QILRGYPVQV STVKEMNGDV 1380 SRSQLPEVKS LSMLERGVTG PYLAQDCHLQ KCNSSKSVAE LPLLVQNLEK ANEHPKSHSR 1440 SMSDTEKPCR NGNVKLFGQI LNSSSQDDDK VAHFPKQTTK SSNLKFTGHN NVDGNTSFSK 1500 FDRNNYHASE NVPKRSYGFW DGNRIQTGLS SLPDSAILVA KYPAAFVNYP SSSSQMEQQA 1560 LQTVVRSNER NLNGVSVYPP REISSNNGVV DYQVYRGRDC TKVAPFTVDM KQRQEMFSEM 1620 QRRNRFDAIP NLQQQGRGGM VGMNVVGRGG VIVGGPSISD PVAVLRMQYA KTEQYGGQSG 1680 SIGREEESWR GKGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1697 aa Download sequence

MGPLENSLVG DPLTCVVHLG SWHLFAEENG GHGYMPSRSG DKILDDENCR QSVSRGDGKY  60
SRNSSRENNR GSYSQRDWRA HSWEMSNGSP NTPGRPHDVN NEQRSVDDML TYPSHAHSDF  120
VNTWDQLHKE QHDNKTSGVN GLGTGLRCER ENSVGSMDWK PLKWSRSGSL SSRGSGFSHS  180
SSSKSLGGVD SGEGKPELQQ KNLTPVQSPS GDAAACVTSA APSDETMSRK KPRLGWGEGL  240
AKYEKKKVEG PDTSMNRGVA TISVGNTEPN NSLSSNLADK SPRVLGFSDC ASPATPSSVA  300
CSSSPGVEEK SFGKAANIDN DISNLCGSPS LGSQNQLEGP SFNLEKVDMN SIINMGSSLV  360
DLLQSDDPST VDSSFVRSTA LNKLLLWKGD VLKALEMTES EIDSLENELK SLKANSGSRY  420
PCPATSSSLP VEENGRACEE LEAISSMIPR PAPLKIDPCG DALEEKVPLC NGVLEEVNAD  480
AKDGDLDSPG TATSKFVEPS SLDKAVSPSD VKLHECSGDL GTAQLTTMGE VNLAPGSNND  540
GTGVPNSGEG SGLEKIDNDV HVPEPSSTVA DTENMMYDVI LATNKELANS ASKVFNNLLP  600
KDWCSIEISE IANGACWQTD SLIREKIVKR KQCVRFKERV LTLKFKAFQH AWKEDIHSPS  660
IRKYRAKSQK KYELSLRSTL GGCQKHRSSI RSRLTSPAGN LSLEPNVEMI NFVSKLLSDS  720
HVRLYRNALK MPALFLDEKE KQVSRFISSN GLVEDPCAVE KERTLINPWT SEEKEIFMDK  780
LAAFGKDFRK IASFLDHKTT ADCVEFYYKN HKSECFEKTK KKLDLSKQGK STANTYLLTS  840
GKKWSRELNA ASLDVLGEAS VIAAHAESGM RNRQTSSGRI FLGGRFDSKA SRVDDSIVER  900
SSSFDVIGND RETVAADVLA GICGSLSSEA MSSCITSSAD PGESYQREWK CQKVDSVVKR  960
PSTSDVIQNI DDDTCSDESC GEMDPADWTD EEKSVFIQAV SSYGKDFAMI SRCVGTRSRD  1020
QCKVFFSKAR KCLGLDLIQP RTRNMGTPMS DDANGGGSDV EDACVLESSV VCSDKLGSKV  1080
EDLPSTIVSM NVDESDPTGE VSLQTDLNVL EENNGALLNH RDSEVVETMV SDVGQPEPIC  1140
ESGGDMNVGS NKTESVEVQK SVALANLNAG RKQAAEQGVT VAVPASVREA VDPCPPSLVA  1200
VVEPISVAGC APEGFGDDLK AQETSLGKNG LDEPDIKCSA ETSSQSISRL DSNKTSDESI  1260
DKSSCSGFSV NTKGLHRDPL DLDSAEKASA VLLPKKNSSA TDSALHDSDA LQCEKVCNQD  1320
RLSSTLDYQE NEDKEAHKSV SGDESDRLSG KPVVNLTESY QILRGYPVQV STVKEMNGDV  1380
SRSQLPEVKS LSMLERGVTG PYLAQDCHLQ KCNSSKSVAE LPLLVQNLEK ANEHPKSHSR  1440
SMSDTEKPCR NGNVKLFGQI LNSSSQDDDK VAHFPKQTTK SSNLKFTGHN NVDGNTSFSK  1500
FDRNNYHASE NVPKRSYGFW DGNRIQTGLS SLPDSAILVA KYPAAFVNYP SSSSQMEQQA  1560
LQTVVRSNER NLNGVSVYPP REISSNNGVV DYQVYRGRDC TKVAPFTVDM KQRQEMFSEM  1620
QRRNRFDAIP NLQQQGRGGM VGMNVVGRGG VIVGGPSISD PVAVLRMQYA KTEQYGGQSG  1680
SIGREEESWR GKGDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein