PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295647.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 1745aa MW: 190175 Da PI: 5.4131

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295647.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.5e-09	816	857	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia+ + ++t +c+++++k XP_021295647.1 816 PWTSEEKEIFMDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 857 8***************99.*****.*********98 PP
2	Myb_DNA-binding	32.5	2e-10	1036	1075	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ XP_021295647.1 1036 WTDEEKSVFIQAVSSYGKD-FAMISRCVG-TRSRDQCKVFFS 1075 ***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1745 aa Download sequence
MPPEPLPWDR KDFYKERKHE RTESQPQQPS TARWRDSSSM SSYPHGSFRE FARWGSADLR 60 RPPGHGKQGS WHLFAEENGG HGYMPSRSGD KILDDENCRQ SVSRGDGKYS RNSSRENNRG 120 SYSQRDWRAH SWEMSNGSPN TPGRPHDVNN EQRSVDDMLT YPSHAHSDFV NTWDQLHKEQ 180 HDNKTSGVNG LGTGLRCERE NSVGSMDWKP LKWSRSGSLS SRGSGFSHSS SSKSLGGVDS 240 GEGKPELQQK NLTPVQSPSG DAAACVTSAA PSDETMSRKK PRLGWGEGLA KYEKKKVEGP 300 DTSMNRGVAT ISVGNTEPNN SLSSNLADKS PRVLGFSDCA SPATPSSVAC SSSPGVEEKS 360 FGKAANIDND ISNLCGSPSL GSQNQLEGPS FNLEKVDMNS IINMGSSLVD LLQSDDPSTV 420 DSSFVRSTAL NKLLLWKGDV LKALEMTESE IDSLENELKS LKANSGSRYP CPATSSSLPV 480 EENGRACEEL EAISSMIPRP APLKIDPCGD ALEEKVPLCN GVLEEVNADA KDGDLDSPGT 540 ATSKFVEPSS LDKAVSPSDV KLHECSGDLG TAQLTTMGEV NLAPGSNNDG TGVPNSGEGS 600 GLEKIDNDVH VPEPSSTVAD TENMMYDVIL ATNKELANSA SKVFNNLLPK DWCSIEISEI 660 ANGACWQTDS LIREKIVKRK QCVRFKERVL TLKFKAFQHA WKEDIHSPSI RKYRAKSQKK 720 YELSLRSTLG GCQKHRSSIR SRLTSPGNLS LEPNVEMINF VSKLLSDSHV RLYRNALKMP 780 ALFLDEKEKQ VSRFISSNGL VEDPCAVEKE RTLINPWTSE EKEIFMDKLA AFGKDFRKIA 840 SFLDHKTTAD CVEFYYKNHK SECFEKTKKK LDLSKQGKST ANTYLLTSGK KWSRELNAAS 900 LDVLGEASVI AAHAESGMRN RQTSSGRIFL GGRFDSKASR VDDSIVERSS SFDVIGNDRE 960 TVAADVLAGI CGSLSSEAMS SCITSSADPG ESYQREWKCQ KVDSVVKRPS TSDVIQNIDD 1020 DTCSDESCGE MDPADWTDEE KSVFIQAVSS YGKDFAMISR CVGTRSRDQC KVFFSKARKC 1080 LGLDLIQPRT RNMGTPMSDD ANGGGSDVED ACVLESSVVC SDKLGSKVED LPSTIVSMNV 1140 DESDPTGEVS LQTDLNVLEE NNGALLNHRD SEVVETMVSD VGQPEPICES GGDMNVGSNK 1200 TESVEVQKSV ALANLNAGRK QAAEQGVTVA VPASVREAVD PCPPSLVAVV EPISVAGCAP 1260 EGFGDDLKAQ ETSLGKNGLD EPDIKCSAET SSQSISRLDS NKTSDESIDK SSCSGFSVNT 1320 KGLHRDPLDL DSAEKASAVL LPKKNSSATD SALHDSDALQ CEKVCNQDRL SSTLDYQENE 1380 DKEAHKSVSG DESDRLSGKP VVNLTESYQI LRGYPVQVST VKEMNGDVSR SQLPEVKSLS 1440 MLERGVTGPY LAQDCHLQKC NSSKSVAELP LLVQNLEKAN EHPKSHSRSM SDTEKPCRNG 1500 NVKLFGQILN SSSQDDDKVA HFPKQTTKSS NLKFTGHNNV DGNTSFSKFD RNNYHASENV 1560 PKRSYGFWDG NRIQTGLSSL PDSAILVAKY PAAFVNYPSS SSQMEQQALQ TVVRSNERNL 1620 NGVSVYPPRE ISSNNGVVDY QVYRGRDCTK VAPFTVDMKQ RQEMFSEMQR RNRFDAIPNL 1680 QQQGRGGMVG MNVVGRGGVI VGGPSISDPV AVLRMQYAKT EQYGGQSGSI GREEESWRGK 1740 GDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1745 aa Download sequence

MPPEPLPWDR KDFYKERKHE RTESQPQQPS TARWRDSSSM SSYPHGSFRE FARWGSADLR  60
RPPGHGKQGS WHLFAEENGG HGYMPSRSGD KILDDENCRQ SVSRGDGKYS RNSSRENNRG  120
SYSQRDWRAH SWEMSNGSPN TPGRPHDVNN EQRSVDDMLT YPSHAHSDFV NTWDQLHKEQ  180
HDNKTSGVNG LGTGLRCERE NSVGSMDWKP LKWSRSGSLS SRGSGFSHSS SSKSLGGVDS  240
GEGKPELQQK NLTPVQSPSG DAAACVTSAA PSDETMSRKK PRLGWGEGLA KYEKKKVEGP  300
DTSMNRGVAT ISVGNTEPNN SLSSNLADKS PRVLGFSDCA SPATPSSVAC SSSPGVEEKS  360
FGKAANIDND ISNLCGSPSL GSQNQLEGPS FNLEKVDMNS IINMGSSLVD LLQSDDPSTV  420
DSSFVRSTAL NKLLLWKGDV LKALEMTESE IDSLENELKS LKANSGSRYP CPATSSSLPV  480
EENGRACEEL EAISSMIPRP APLKIDPCGD ALEEKVPLCN GVLEEVNADA KDGDLDSPGT  540
ATSKFVEPSS LDKAVSPSDV KLHECSGDLG TAQLTTMGEV NLAPGSNNDG TGVPNSGEGS  600
GLEKIDNDVH VPEPSSTVAD TENMMYDVIL ATNKELANSA SKVFNNLLPK DWCSIEISEI  660
ANGACWQTDS LIREKIVKRK QCVRFKERVL TLKFKAFQHA WKEDIHSPSI RKYRAKSQKK  720
YELSLRSTLG GCQKHRSSIR SRLTSPGNLS LEPNVEMINF VSKLLSDSHV RLYRNALKMP  780
ALFLDEKEKQ VSRFISSNGL VEDPCAVEKE RTLINPWTSE EKEIFMDKLA AFGKDFRKIA  840
SFLDHKTTAD CVEFYYKNHK SECFEKTKKK LDLSKQGKST ANTYLLTSGK KWSRELNAAS  900
LDVLGEASVI AAHAESGMRN RQTSSGRIFL GGRFDSKASR VDDSIVERSS SFDVIGNDRE  960
TVAADVLAGI CGSLSSEAMS SCITSSADPG ESYQREWKCQ KVDSVVKRPS TSDVIQNIDD  1020
DTCSDESCGE MDPADWTDEE KSVFIQAVSS YGKDFAMISR CVGTRSRDQC KVFFSKARKC  1080
LGLDLIQPRT RNMGTPMSDD ANGGGSDVED ACVLESSVVC SDKLGSKVED LPSTIVSMNV  1140
DESDPTGEVS LQTDLNVLEE NNGALLNHRD SEVVETMVSD VGQPEPICES GGDMNVGSNK  1200
TESVEVQKSV ALANLNAGRK QAAEQGVTVA VPASVREAVD PCPPSLVAVV EPISVAGCAP  1260
EGFGDDLKAQ ETSLGKNGLD EPDIKCSAET SSQSISRLDS NKTSDESIDK SSCSGFSVNT  1320
KGLHRDPLDL DSAEKASAVL LPKKNSSATD SALHDSDALQ CEKVCNQDRL SSTLDYQENE  1380
DKEAHKSVSG DESDRLSGKP VVNLTESYQI LRGYPVQVST VKEMNGDVSR SQLPEVKSLS  1440
MLERGVTGPY LAQDCHLQKC NSSKSVAELP LLVQNLEKAN EHPKSHSRSM SDTEKPCRNG  1500
NVKLFGQILN SSSQDDDKVA HFPKQTTKSS NLKFTGHNNV DGNTSFSKFD RNNYHASENV  1560
PKRSYGFWDG NRIQTGLSSL PDSAILVAKY PAAFVNYPSS SSQMEQQALQ TVVRSNERNL  1620
NGVSVYPPRE ISSNNGVVDY QVYRGRDCTK VAPFTVDMKQ RQEMFSEMQR RNRFDAIPNL  1680
QQQGRGGMVG MNVVGRGGVI VGGPSISDPV AVLRMQYAKT EQYGGQSGSI GREEESWRGK  1740
GDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein