PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295646.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 1746aa MW: 190246 Da PI: 5.4131

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295646.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.5e-09	817	858	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++ d + +G++ +++Ia+ + ++t +c+++++k XP_021295646.1 817 PWTSEEKEIFMDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 858 8***************99.*****.*********98 PP
2	Myb_DNA-binding	32.5	2e-10	1037	1076	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +++av +G++ ++ I+r++g +R++ qck ++ XP_021295646.1 1037 WTDEEKSVFIQAVSSYGKD-FAMISRCVG-TRSRDQCKVFFS 1076 ***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1746 aa Download sequence
MPPEPLPWDR KDFYKERKHE RTESQPQQPS TARWRDSSSM SSYPHGSFRE FARWGSADLR 60 RPPGHGKQGS WHLFAEENGG HGYMPSRSGD KILDDENCRQ SVSRGDGKYS RNSSRENNRG 120 SYSQRDWRAH SWEMSNGSPN TPGRPHDVNN EQRSVDDMLT YPSHAHSDFV NTWDQLHKEQ 180 HDNKTSGVNG LGTGLRCERE NSVGSMDWKP LKWSRSGSLS SRGSGFSHSS SSKSLGGVDS 240 GEGKPELQQK NLTPVQSPSG DAAACVTSAA PSDETMSRKK PRLGWGEGLA KYEKKKVEGP 300 DTSMNRGVAT ISVGNTEPNN SLSSNLADKS PRVLGFSDCA SPATPSSVAC SSSPGVEEKS 360 FGKAANIDND ISNLCGSPSL GSQNQLEGPS FNLEKVDMNS IINMGSSLVD LLQSDDPSTV 420 DSSFVRSTAL NKLLLWKGDV LKALEMTESE IDSLENELKS LKANSGSRYP CPATSSSLPV 480 EENGRACEEL EAISSMIPRP APLKIDPCGD ALEEKVPLCN GVLEEVNADA KDGDLDSPGT 540 ATSKFVEPSS LDKAVSPSDV KLHECSGDLG TAQLTTMGEV NLAPGSNNDG TGVPNSGEGS 600 GLEKIDNDVH VPEPSSTVAD TENMMYDVIL ATNKELANSA SKVFNNLLPK DWCSIEISEI 660 ANGACWQTDS LIREKIVKRK QCVRFKERVL TLKFKAFQHA WKEDIHSPSI RKYRAKSQKK 720 YELSLRSTLG GCQKHRSSIR SRLTSPAGNL SLEPNVEMIN FVSKLLSDSH VRLYRNALKM 780 PALFLDEKEK QVSRFISSNG LVEDPCAVEK ERTLINPWTS EEKEIFMDKL AAFGKDFRKI 840 ASFLDHKTTA DCVEFYYKNH KSECFEKTKK KLDLSKQGKS TANTYLLTSG KKWSRELNAA 900 SLDVLGEASV IAAHAESGMR NRQTSSGRIF LGGRFDSKAS RVDDSIVERS SSFDVIGNDR 960 ETVAADVLAG ICGSLSSEAM SSCITSSADP GESYQREWKC QKVDSVVKRP STSDVIQNID 1020 DDTCSDESCG EMDPADWTDE EKSVFIQAVS SYGKDFAMIS RCVGTRSRDQ CKVFFSKARK 1080 CLGLDLIQPR TRNMGTPMSD DANGGGSDVE DACVLESSVV CSDKLGSKVE DLPSTIVSMN 1140 VDESDPTGEV SLQTDLNVLE ENNGALLNHR DSEVVETMVS DVGQPEPICE SGGDMNVGSN 1200 KTESVEVQKS VALANLNAGR KQAAEQGVTV AVPASVREAV DPCPPSLVAV VEPISVAGCA 1260 PEGFGDDLKA QETSLGKNGL DEPDIKCSAE TSSQSISRLD SNKTSDESID KSSCSGFSVN 1320 TKGLHRDPLD LDSAEKASAV LLPKKNSSAT DSALHDSDAL QCEKVCNQDR LSSTLDYQEN 1380 EDKEAHKSVS GDESDRLSGK PVVNLTESYQ ILRGYPVQVS TVKEMNGDVS RSQLPEVKSL 1440 SMLERGVTGP YLAQDCHLQK CNSSKSVAEL PLLVQNLEKA NEHPKSHSRS MSDTEKPCRN 1500 GNVKLFGQIL NSSSQDDDKV AHFPKQTTKS SNLKFTGHNN VDGNTSFSKF DRNNYHASEN 1560 VPKRSYGFWD GNRIQTGLSS LPDSAILVAK YPAAFVNYPS SSSQMEQQAL QTVVRSNERN 1620 LNGVSVYPPR EISSNNGVVD YQVYRGRDCT KVAPFTVDMK QRQEMFSEMQ RRNRFDAIPN 1680 LQQQGRGGMV GMNVVGRGGV IVGGPSISDP VAVLRMQYAK TEQYGGQSGS IGREEESWRG 1740 KGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1746 aa Download sequence

MPPEPLPWDR KDFYKERKHE RTESQPQQPS TARWRDSSSM SSYPHGSFRE FARWGSADLR  60
RPPGHGKQGS WHLFAEENGG HGYMPSRSGD KILDDENCRQ SVSRGDGKYS RNSSRENNRG  120
SYSQRDWRAH SWEMSNGSPN TPGRPHDVNN EQRSVDDMLT YPSHAHSDFV NTWDQLHKEQ  180
HDNKTSGVNG LGTGLRCERE NSVGSMDWKP LKWSRSGSLS SRGSGFSHSS SSKSLGGVDS  240
GEGKPELQQK NLTPVQSPSG DAAACVTSAA PSDETMSRKK PRLGWGEGLA KYEKKKVEGP  300
DTSMNRGVAT ISVGNTEPNN SLSSNLADKS PRVLGFSDCA SPATPSSVAC SSSPGVEEKS  360
FGKAANIDND ISNLCGSPSL GSQNQLEGPS FNLEKVDMNS IINMGSSLVD LLQSDDPSTV  420
DSSFVRSTAL NKLLLWKGDV LKALEMTESE IDSLENELKS LKANSGSRYP CPATSSSLPV  480
EENGRACEEL EAISSMIPRP APLKIDPCGD ALEEKVPLCN GVLEEVNADA KDGDLDSPGT  540
ATSKFVEPSS LDKAVSPSDV KLHECSGDLG TAQLTTMGEV NLAPGSNNDG TGVPNSGEGS  600
GLEKIDNDVH VPEPSSTVAD TENMMYDVIL ATNKELANSA SKVFNNLLPK DWCSIEISEI  660
ANGACWQTDS LIREKIVKRK QCVRFKERVL TLKFKAFQHA WKEDIHSPSI RKYRAKSQKK  720
YELSLRSTLG GCQKHRSSIR SRLTSPAGNL SLEPNVEMIN FVSKLLSDSH VRLYRNALKM  780
PALFLDEKEK QVSRFISSNG LVEDPCAVEK ERTLINPWTS EEKEIFMDKL AAFGKDFRKI  840
ASFLDHKTTA DCVEFYYKNH KSECFEKTKK KLDLSKQGKS TANTYLLTSG KKWSRELNAA  900
SLDVLGEASV IAAHAESGMR NRQTSSGRIF LGGRFDSKAS RVDDSIVERS SSFDVIGNDR  960
ETVAADVLAG ICGSLSSEAM SSCITSSADP GESYQREWKC QKVDSVVKRP STSDVIQNID  1020
DDTCSDESCG EMDPADWTDE EKSVFIQAVS SYGKDFAMIS RCVGTRSRDQ CKVFFSKARK  1080
CLGLDLIQPR TRNMGTPMSD DANGGGSDVE DACVLESSVV CSDKLGSKVE DLPSTIVSMN  1140
VDESDPTGEV SLQTDLNVLE ENNGALLNHR DSEVVETMVS DVGQPEPICE SGGDMNVGSN  1200
KTESVEVQKS VALANLNAGR KQAAEQGVTV AVPASVREAV DPCPPSLVAV VEPISVAGCA  1260
PEGFGDDLKA QETSLGKNGL DEPDIKCSAE TSSQSISRLD SNKTSDESID KSSCSGFSVN  1320
TKGLHRDPLD LDSAEKASAV LLPKKNSSAT DSALHDSDAL QCEKVCNQDR LSSTLDYQEN  1380
EDKEAHKSVS GDESDRLSGK PVVNLTESYQ ILRGYPVQVS TVKEMNGDVS RSQLPEVKSL  1440
SMLERGVTGP YLAQDCHLQK CNSSKSVAEL PLLVQNLEKA NEHPKSHSRS MSDTEKPCRN  1500
GNVKLFGQIL NSSSQDDDKV AHFPKQTTKS SNLKFTGHNN VDGNTSFSKF DRNNYHASEN  1560
VPKRSYGFWD GNRIQTGLSS LPDSAILVAK YPAAFVNYPS SSSQMEQQAL QTVVRSNERN  1620
LNGVSVYPPR EISSNNGVVD YQVYRGRDCT KVAPFTVDMK QRQEMFSEMQ RRNRFDAIPN  1680
LQQQGRGGMV GMNVVGRGGV IVGGPSISDP VAVLRMQYAK TEQYGGQSGS IGREEESWRG  1740
KGDIGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	0.0	MYB family protein