PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295564.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 473aa MW: 52050.6 Da PI: 6.132

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295564.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.9e-17	167	216	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_021295564.1 167 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 216 78*****************......55**********************997 PP
2	AP2	39.8	1.1e-12	259	309	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +++++lg f+++ eAa+a++ a+ k +g XP_021295564.1 259 SKYRGVTLHK-CGRWEARMGQY--L-GKRYIYLGLFDSEAEAARAYDMAAMKCNG 309 89******.7**5552..1.25******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MLDLNLDVVS CESSCDENKM LMNGDELPGG VTLTHMEDSG STNSSIINTE EVPSSAGDEN 60 SSNNDASAFI FDILKKETDD TIPTTTTNAE KVENPSPDFV TRQLFPVTGE KGRLELDFRA 120 SFGTKSSARP QWLNLSYAES SGEAELKTVP LKPQPRKSRR GPRSRSSQYR GVTFYRRTGR 180 WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFSLSEYEE DMKQMKQMSK 240 EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQYL GKRYIYLGLF DSEAEAARAY 300 DMAAMKCNGR EAVTNFDPST YEGEITNSLG GNSHNLDLSL GISAPSVAQN FESSAPTSTG 360 VQPQHDLTIG SKHPPILSGV YPGLLPNNEE RGAEKRTEAV STTRFSNWAW QMQGNGNITA 420 TPVFPIAASS GFSSSSATAL STTFPFSNSV QNVCLLTPAT STNNNSYYYS YRS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MLDLNLDVVS CESSCDENKM LMNGDELPGG VTLTHMEDSG STNSSIINTE EVPSSAGDEN  60
SSNNDASAFI FDILKKETDD TIPTTTTNAE KVENPSPDFV TRQLFPVTGE KGRLELDFRA  120
SFGTKSSARP QWLNLSYAES SGEAELKTVP LKPQPRKSRR GPRSRSSQYR GVTFYRRTGR  180
WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFSLSEYEE DMKQMKQMSK  240
EEFVHILRRQ STGFSRGSSK YRGVTLHKCG RWEARMGQYL GKRYIYLGLF DSEAEAARAY  300
DMAAMKCNGR EAVTNFDPST YEGEITNSLG GNSHNLDLSL GISAPSVAQN FESSAPTSTG  360
VQPQHDLTIG SKHPPILSGV YPGLLPNNEE RGAEKRTEAV STTRFSNWAW QMQGNGNITA  420
TPVFPIAASS GFSSSSATAL STTFPFSNSV QNVCLLTPAT STNNNSYYYS YRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	3e-92	AP2 family protein