PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295548.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 283aa    MW: 32268.9 Da    PI: 9.5312
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-092469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE + +  a + +G +   +W ++a++++ g+t  +++  ++ 
   XP_021295548.1 24 SWTKEENKMFESALAIYGEDvpdRWLKVAEMIP-GKTVSDVIKQYRE 69
                     7********************************.*******999986 PP
2Myb_DNA-binding40.85e-13124168347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_021295548.1 124 PWTEEEHRRFLMGLLKYGKGDWRNISRNFVVSKTPTQVASHAQKY 168
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
METLFATSFM SNSDWFDQES NSTSWTKEEN KMFESALAIY GEDVPDRWLK VAEMIPGKTV  60
SDVIKQYREL EEDVFKIEAG RFPIPGYFSS SFTLELVDNR DFDAYRKRST GARGPDHERK  120
KGVPWTEEEH RRFLMGLLKY GKGDWRNISR NFVVSKTPTQ VASHAQKYYQ RQLSGGKDKR  180
RPSIHDITTV NLTNTTFSDN HKPPSVNHSN VLALQQKLAS MPKVGNNWNH PNDGSAMAFN  240
STHGNWFTSS QYQTASNGLR LQGQNLYGSA YHGAHIKPQS SVF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.11e-99MYB family protein