PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295528.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 689aa MW: 74648.7 Da PI: 5.9684

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.4	9e-07	276	296	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ d+C +aHg XP_021295528.1 276 PCPEFRK-GACPKSDSCEYAHG 296 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence
MCSGSKSELV PSRIIMEGEL HEPKAGAALC KCSVLLELAA SDDLVGFKSE VEEKGLDLDE 60 ASFWYGRRIG SRKMGFEERT PLTIAAMFGS VDVLKYIIGS GKIDVNRACG TDGVTALHCA 120 VAGGANSSVK IVKLLLDASA DANCVDANGN KPVDLIVPAL KSLSISRRKV IELLLKGDDI 180 VGASDLVLNQ EEEESEQIVL PQLLKEGPEK KEYPVDVSLP DINNGVYGTD EFRMYTFKVK 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKY PYSCVPCPEF RKGACPKSDS CEYAHGVFES 300 WLHPAQYRTR LCKDEIGCTR KVCFFAHKPE ELRPVYASTG SAMPSPRSAA VNAVDMATLS 360 PLALGSSSLP LPTTSTPPMS PLAASSSPKA GSLWQNKINL TPPVLQLPGS RLKTAFSARD 420 LDLEMELLGL ENHASQLQQQ QLMDEISSLS SPSCWSKEYS RLGDLKPTNL DDAFGLLDPS 480 LLSPLKGLSV NSATPTQLQS PSGLQIRQNL NQLRSSYPTN LSSSPVRKPS AFGFDSSAAV 540 AAAVMNSRSS AFAKRSQSFV DRGALTTRAG LTAPANSATM MSSNISDWSS PDGKLDWGIQ 600 GDELNKLRKS ASFGFRSNNP ATTASMDMMP SNFDEPDVSW VNTLVKDATP VGGGLQQQQQ 660 RYSGLGKGVR ETLPPWVEQM YIEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence

MCSGSKSELV PSRIIMEGEL HEPKAGAALC KCSVLLELAA SDDLVGFKSE VEEKGLDLDE  60
ASFWYGRRIG SRKMGFEERT PLTIAAMFGS VDVLKYIIGS GKIDVNRACG TDGVTALHCA  120
VAGGANSSVK IVKLLLDASA DANCVDANGN KPVDLIVPAL KSLSISRRKV IELLLKGDDI  180
VGASDLVLNQ EEEESEQIVL PQLLKEGPEK KEYPVDVSLP DINNGVYGTD EFRMYTFKVK  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY PYSCVPCPEF RKGACPKSDS CEYAHGVFES  300
WLHPAQYRTR LCKDEIGCTR KVCFFAHKPE ELRPVYASTG SAMPSPRSAA VNAVDMATLS  360
PLALGSSSLP LPTTSTPPMS PLAASSSPKA GSLWQNKINL TPPVLQLPGS RLKTAFSARD  420
LDLEMELLGL ENHASQLQQQ QLMDEISSLS SPSCWSKEYS RLGDLKPTNL DDAFGLLDPS  480
LLSPLKGLSV NSATPTQLQS PSGLQIRQNL NQLRSSYPTN LSSSPVRKPS AFGFDSSAAV  540
AAAVMNSRSS AFAKRSQSFV DRGALTTRAG LTAPANSATM MSSNISDWSS PDGKLDWGIQ  600
GDELNKLRKS ASFGFRSNNP ATTASMDMMP SNFDEPDVSW VNTLVKDATP VGGGLQQQQQ  660
RYSGLGKGVR ETLPPWVEQM YIEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein