PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295209.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 887aa MW: 97130.8 Da PI: 7.9498

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58	1.7e-18	341	440	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+v+F++ + +++ XP_021295209.1 341 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDVVTFSRLE-PGGK 433 89************************555566778***********99899999999.*******************655.5665 PP .EEEEE- CS B3 92 lvvkvfr 98 lv++ ++ XP_021295209.1 434 LVMGCRK 440 6665554 PP

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence
MTSTSGAASS SKICFNSDCK DLKSERARKG WRLRTGEFAE LCDRCASAFE EGRFCDTFHL 60 NASGWRSCES CGKRVHCGCI VSVYAFTLLD AGGIECIACA RKNVVLGSNS SWPPSLLFHP 120 PLSERLKDYS AKGWSQLAGS GPVPWRQAPS LFNSPISQPE WHSKVSYEVD LSTGIDRLNA 180 DRLSTPSLEK KKIEDFSERL MNGTLKLGTR DIHENGNAGI NCEEQPGSCL TKSQQPSLKE 240 EPSNPPFGLS VPYTSPDEAN GQIGVSGSHL RPTPTXALAK QFHSNLQNGL DSSGETQIRN 300 GRPRPDGRGR NQLFPRYWPR FTDQDLQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK 360 KCAEAYFPPI SQPEGLPLKV QDSKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQNMQLQAG 420 DVVTFSRLEP GGKLVMGCRK ASTASASEQD NEAKNSNGVS THGDAELADP TSWSKVDKSG 480 YIAKEALGTK LAVSRKRKNS TLGSKSKRLR IDNEDLIELK LTWEEAQGLL RPPPNHVPSV 540 VVIEGFEFEE YEDAPILGKP TIFATDNSGE KIQWVQCEDC FKWRRLPSNA LLPSKWTCAS 600 NSWDPERSFC SVAQELTAEQ LEDLLPHCNP AASKKMKAAK QEPENVDALE GLDTLANLAI 660 LGEGGALPAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCQ TVKRRFRTLM 720 LRREKKQSQK EAETTRKKQQ PSLPDKLLDD DPLPCTNAGN SSPNPKKLVS EGSDDDPNRI 780 KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMMRLLQDAT ERYLRQQRML SSGGSSNSTV 840 TQAQSGGGTE GEKTSSSVNL GASHQDADRD RTAVFSIKSS APTSATG

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence

MTSTSGAASS SKICFNSDCK DLKSERARKG WRLRTGEFAE LCDRCASAFE EGRFCDTFHL  60
NASGWRSCES CGKRVHCGCI VSVYAFTLLD AGGIECIACA RKNVVLGSNS SWPPSLLFHP  120
PLSERLKDYS AKGWSQLAGS GPVPWRQAPS LFNSPISQPE WHSKVSYEVD LSTGIDRLNA  180
DRLSTPSLEK KKIEDFSERL MNGTLKLGTR DIHENGNAGI NCEEQPGSCL TKSQQPSLKE  240
EPSNPPFGLS VPYTSPDEAN GQIGVSGSHL RPTPTXALAK QFHSNLQNGL DSSGETQIRN  300
GRPRPDGRGR NQLFPRYWPR FTDQDLQQIS GDSNSVITPL FEKMLSASDA GRIGRLVLPK  360
KCAEAYFPPI SQPEGLPLKV QDSKGKEWIF QFRFWPNNNS RMYVLEGVTP CIQNMQLQAG  420
DVVTFSRLEP GGKLVMGCRK ASTASASEQD NEAKNSNGVS THGDAELADP TSWSKVDKSG  480
YIAKEALGTK LAVSRKRKNS TLGSKSKRLR IDNEDLIELK LTWEEAQGLL RPPPNHVPSV  540
VVIEGFEFEE YEDAPILGKP TIFATDNSGE KIQWVQCEDC FKWRRLPSNA LLPSKWTCAS  600
NSWDPERSFC SVAQELTAEQ LEDLLPHCNP AASKKMKAAK QEPENVDALE GLDTLANLAI  660
LGEGGALPAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCQ TVKRRFRTLM  720
LRREKKQSQK EAETTRKKQQ PSLPDKLLDD DPLPCTNAGN SSPNPKKLVS EGSDDDPNRI  780
KSSTSPFKGQ IDLNIQPERE EELSPGSDSG SMMRLLQDAT ERYLRQQRML SSGGSSNSTV  840
TQAQSGGGTE GEKTSSSVNL GASHQDADRD RTAVFSIKSS APTSATG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-158	B3 family protein