PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021295153.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 437aa    MW: 49211.3 Da    PI: 10.1577
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021295153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.74.1e-103887149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgklyey 49
                    kr e++  r +tfs R+ g+ KKA+EL v L +  + +++fs+tgk + y
  XP_021295153.1 38 KRNEDDGERFITFSERKSGLXKKANELQVtLSGDGIGILVFSPTGKPFSY 87
                    57789999*******************755***************96655 PP
2SRF-TF58.86.6e-19174221148
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 
                     k+ien   r +tfskRr gi KKA+EL +LC+ae+a i+fs+ gk + 
  XP_021295153.1 174 KKIENGDDRLITFSKRRSGIYKKASELATLCGAEIAFIVFSPAGKPFS 221
                     68******************************************9665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    
MKCTPKARTF QPRNHQQIIQ ERTKGLCQTK ACQRIEMKRN EDDGERFITF SERKSGLXKK  60
ANELQVTLSG DGIGILVFSP TGKPFSYGHP SIESITNRRL RHRSLLRGVY EIKIRASALS  120
LPSTNPAQAT NPFASYRHEY FXNEDDHKRN CNIFVNKVLG SGKKTRGRQK IEMKKIENGD  180
DRLITFSKRR SGIYKKASEL ATLCGAEIAF IVFSPAGKPF SYGHPSVESV VNRYLNQNPP  240
PNDNTHPLVE AHRKLRINTL AQQHNELVTQ LDAEKERGKK LDQLTSGKET KGWWEAPIDQ  300
LNQQELEKLY SSFAELRTSL HSKMKEKSAE ATSSQLALMN PAQLTTPFPS NPFPTNLNEQ  360
VPAQLTTPFP TIPFPTNLNE QVPAQLTTPF PTNPFPTNLN EQVPAQLTTP FPTNPFPTNL  420
NEQVPGFFPP GFGPGRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.13e-42M-type_MADS family protein