PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021295029.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 555aa MW: 62895.7 Da PI: 5.8862

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021295029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	56.7	4.4e-18	307	398	3	92
EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k+l++sdv+++gr+vlpk+ ae + ++ +e+++++++d s+++W++k+++ ++ks++yvl+ ++ +Fvk+ngL+ gD+++++ ++++++l XP_021295029.1 307 KELKNSDVGSLGRIVLPKREAEGNlpTLSDKEGIQVMIKDvYSNQVWTLKYKFwsNNKSRMYVLE-NTGDFVKQNGLEIGDSLTLY--EDESKNL 398 899*********************555668899*7888***99888888889999.******************..4455544 PP

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence
MTWRLFSIVP LQTENCDLLC KLNWTEALDM ASEWQCSGAD NGHREVKQTA KITLKEADIP 60 SSISASLPYD SPFHELLVTD EPKTATFKPK VAPTLSQALS VMENSYTPFT PTTNTTLRQP 120 NKGWSQNSEF SIYEPMNLKN FTSTPLSTAS NSQFHHPPQF EAPXQSLQPP YRHPIEQAGH 180 SLAYPMYPFF XGQNGIEYGV SSSIHANNGV QGSCFMQTDG LSKEQERRIM DPYRTKVARI 240 KRKLARQRSL SLQRNASSGA STQVDVRRLI SSGADNSTDV NNSNDTKRDL YKFRTPDNKR 300 LRVLLRKELK NSDVGSLGRI VLPKREAEGN LPTLSDKEGI QVMIKDVYSN QVWTLKYKFW 360 SNNKSRMYVL ENTGDFVKQN GLEIGDSLTL YEDESKNLVE QYFSIIKLER IIAAEPPSNH 420 QHSDNETNYY SNSDHHHMYL PFTCQSRDEE ETSLELLIEQ LKHKEQEETN DLMSLSMDAA 480 YSHRLPEEAK SFLSDADGVA SMETYTPIAA TTLQTSSTLL RGKAKSVDDF QLSNFDDCYG 540 GLDMLPDVNH YNFSL

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence

MTWRLFSIVP LQTENCDLLC KLNWTEALDM ASEWQCSGAD NGHREVKQTA KITLKEADIP  60
SSISASLPYD SPFHELLVTD EPKTATFKPK VAPTLSQALS VMENSYTPFT PTTNTTLRQP  120
NKGWSQNSEF SIYEPMNLKN FTSTPLSTAS NSQFHHPPQF EAPXQSLQPP YRHPIEQAGH  180
SLAYPMYPFF XGQNGIEYGV SSSIHANNGV QGSCFMQTDG LSKEQERRIM DPYRTKVARI  240
KRKLARQRSL SLQRNASSGA STQVDVRRLI SSGADNSTDV NNSNDTKRDL YKFRTPDNKR  300
LRVLLRKELK NSDVGSLGRI VLPKREAEGN LPTLSDKEGI QVMIKDVYSN QVWTLKYKFW  360
SNNKSRMYVL ENTGDFVKQN GLEIGDSLTL YEDESKNLVE QYFSIIKLER IIAAEPPSNH  420
QHSDNETNYY SNSDHHHMYL PFTCQSRDEE ETSLELLIEQ LKHKEQEETN DLMSLSMDAA  480
YSHRLPEEAK SFLSDADGVA SMETYTPIAA TTLQTSSTLL RGKAKSVDDF QLSNFDDCYG  540
GLDMLPDVNH YNFSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28300.1	3e-57	B3 family protein