PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021294929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20255.3 Da PI: 10.2688 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.2 | 4e-22 | 11 | 53 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++++s rqvtfskRr+g++KKA+EL +LC+a+va+++fs+ gk XP_021294929.1 11 VKDSSSRQVTFSKRRTGLFKKANELATLCGAQVAIVVFSPGGK 53 7899************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MGRRKIEMEM VKDSSSRQVT FSKRRTGLFK KANELATLCG AQVAIVVFSP GGKPFSFGHP 60 SVEAVTQRFL NQDEKPKVSI SGQVGSQQQA KVENLSQQLN DLLKQIQEEK KRGEMLDKAI 120 KASGKHKCQK PVNKLSLDEL LQMKQSMEEL REKLKGRVSE IEASSSLLLL SNNGVKEADP 180 DN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 5e-46 | M-type_MADS family protein |