PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294888.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 1714aa MW: 193606 Da PI: 5.348

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	8.9e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+ L++klgL++rq ++WF+ rR kekk XP_021294888.1 29 PKRQMKTPYQLEALEKAYALETYPSEATRAGLSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1714 aa Download sequence
MEPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL 60 SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLRAGP EPDYGSGSGS 120 GSGSSPYTDS RKLGGSSSRG MTEDLPMARR YYESHQSIME LRAIACVEAQ LGEPLRDDGP 180 MLGMEFDPLP PDAFGAIPEP QKRSGHPYES KAYERHDGRS SKAVARAFHE YQFLPEHASL 240 RSDAYGQVTQ SHFHESPVDG ARARATSFVH GEEPLPRVHG IQERESFTNG RLNTQSIGHP 300 VLGSEDSYVL STGQTLNIDA DLRNDRKRKS DENRIAREVE AHENRIRKEL EKLDLKRRKS 360 EERMKKEMER HARERRKEEE RLMREKQREE ERSQREQRRE IERREKFLQK EYLRAEKRRQ 420 KEELRREKEA ERRRVAMEKA TARKIAKESM DLIEDEQLEL MELAAANKGI PSIIQLDHDS 480 LQNLESFRDS LSLFPPKSVQ LKRPFAIQPW IDSEENVGNL LMAWRFLITF ADILRLWPFT 540 LDEFVQGFHD YDSRLLGEIH VALLKSIIKD IEDVARTPST GLGMNQYCAA NPEGGHPQIV 600 EGAYSWGFDI RNWQRHLNPL TWSEIFRQLA ISAGLGPQLK KRNAAWTFMG DNDEGKGCED 660 AVSTLRNGSA AENAFALMRE KGLLLPRRSR HRLTPGTVKF AAFHVLSLEG SKGLTVLELA 720 DKIQKSGLRD LTTSKTPEAS ISVALTRDAK LFERIAPSTY CVRPAYRKDP ADAEAILAAA 780 RKKIRQFENG FLGGEDADEV ERDEVERDED SECDVDEEPE VDDIATPSNA NKDADYPKDE 840 VNTCSGSGKV HVSTDALNVP SEFDKDFSSF PPNIMKDANG PSNTGQYVAR EEIGTGNPDQ 900 QNIEIDESKS GESWIQGLSE GEYSHLSVEE RLNALVALIG IANEGNSIRA VLEDRLEAAN 960 ALKKQMWAEA QLDKSRLKEE TIVKMDFPST MGIKAEPQLP NSVVEGSQSP FPAAYNKNDE 1020 ASPSIPDDQK PLLCPQNVQN DLNSYPAERA LVLQEASVGP DNFSAQQIGH ASKRSRSQLK 1080 SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF VASASKNDPC SGWIFVELHD GNWRLIDSEE 1140 AFDALWTSLD ARGIRESHLR IMLQKIETSF KENVRRNLHC ARAIGRSGSS TENEVSELDS 1200 SPDFPASFDS PSSAICGLNS DASETLPTFI IQLGRNENEK KLALKRYQDF HRWIWKECYN 1260 SSTLCAMKYG KKRCVQLLAV CDACLGSHIP EEMHCVYCHQ TFGSINNSFN FSEHEIQCKE 1320 NRKLDTKDTY TIDCSLPLGI RLLKSLCALV EVSIPPEALE SIWTEGHRKM WGRKLNATSS 1380 VDELLKILTH LESAIKRDHL LSNFETTKEL LGSSLLSESD SSDSVLPWIP QTTAAVALRL 1440 LELDVSIMYV KQEKVEPSEN KEARAYIKLP SRTSLFIKNK ELELKELDQD EAMKEENFAD 1500 MSHSKRNSYK RGRGGREQGS GRKWRRRASG SRYDTGKQRA REKNNLSFRL KQQGQRTNGQ 1560 SSGRGRRTVR KRGERRAADN TMVARMADVI KPKANDVRDL DEEWRTEKFR VMQMVNPPDS 1620 NSAEEESDDN AQGEGYDQGN WDLDYNGASN GWNAEAMEAS DEDDDAYEDD NGVEQLGEED 1680 SDGDLEISDA SDVVANKAGN DDGSDLAVSE DYSD

Sequence ? help Back to Top

Protein Sequence Length: 1714 aa Download sequence

MEPGSEEENN PSKNPNKNVN SSNEGHVKPK RQMKTPYQLE ALEKAYALET YPSEATRAGL  60
SEKLGLSDRQ LQMWFCHRRL KEKKETPSKK PRKGAALPPE SPIDDLRAGP EPDYGSGSGS  120
GSGSSPYTDS RKLGGSSSRG MTEDLPMARR YYESHQSIME LRAIACVEAQ LGEPLRDDGP  180
MLGMEFDPLP PDAFGAIPEP QKRSGHPYES KAYERHDGRS SKAVARAFHE YQFLPEHASL  240
RSDAYGQVTQ SHFHESPVDG ARARATSFVH GEEPLPRVHG IQERESFTNG RLNTQSIGHP  300
VLGSEDSYVL STGQTLNIDA DLRNDRKRKS DENRIAREVE AHENRIRKEL EKLDLKRRKS  360
EERMKKEMER HARERRKEEE RLMREKQREE ERSQREQRRE IERREKFLQK EYLRAEKRRQ  420
KEELRREKEA ERRRVAMEKA TARKIAKESM DLIEDEQLEL MELAAANKGI PSIIQLDHDS  480
LQNLESFRDS LSLFPPKSVQ LKRPFAIQPW IDSEENVGNL LMAWRFLITF ADILRLWPFT  540
LDEFVQGFHD YDSRLLGEIH VALLKSIIKD IEDVARTPST GLGMNQYCAA NPEGGHPQIV  600
EGAYSWGFDI RNWQRHLNPL TWSEIFRQLA ISAGLGPQLK KRNAAWTFMG DNDEGKGCED  660
AVSTLRNGSA AENAFALMRE KGLLLPRRSR HRLTPGTVKF AAFHVLSLEG SKGLTVLELA  720
DKIQKSGLRD LTTSKTPEAS ISVALTRDAK LFERIAPSTY CVRPAYRKDP ADAEAILAAA  780
RKKIRQFENG FLGGEDADEV ERDEVERDED SECDVDEEPE VDDIATPSNA NKDADYPKDE  840
VNTCSGSGKV HVSTDALNVP SEFDKDFSSF PPNIMKDANG PSNTGQYVAR EEIGTGNPDQ  900
QNIEIDESKS GESWIQGLSE GEYSHLSVEE RLNALVALIG IANEGNSIRA VLEDRLEAAN  960
ALKKQMWAEA QLDKSRLKEE TIVKMDFPST MGIKAEPQLP NSVVEGSQSP FPAAYNKNDE  1020
ASPSIPDDQK PLLCPQNVQN DLNSYPAERA LVLQEASVGP DNFSAQQIGH ASKRSRSQLK  1080
SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF VASASKNDPC SGWIFVELHD GNWRLIDSEE  1140
AFDALWTSLD ARGIRESHLR IMLQKIETSF KENVRRNLHC ARAIGRSGSS TENEVSELDS  1200
SPDFPASFDS PSSAICGLNS DASETLPTFI IQLGRNENEK KLALKRYQDF HRWIWKECYN  1260
SSTLCAMKYG KKRCVQLLAV CDACLGSHIP EEMHCVYCHQ TFGSINNSFN FSEHEIQCKE  1320
NRKLDTKDTY TIDCSLPLGI RLLKSLCALV EVSIPPEALE SIWTEGHRKM WGRKLNATSS  1380
VDELLKILTH LESAIKRDHL LSNFETTKEL LGSSLLSESD SSDSVLPWIP QTTAAVALRL  1440
LELDVSIMYV KQEKVEPSEN KEARAYIKLP SRTSLFIKNK ELELKELDQD EAMKEENFAD  1500
MSHSKRNSYK RGRGGREQGS GRKWRRRASG SRYDTGKQRA REKNNLSFRL KQQGQRTNGQ  1560
SSGRGRRTVR KRGERRAADN TMVARMADVI KPKANDVRDL DEEWRTEKFR VMQMVNPPDS  1620
NSAEEESDDN AQGEGYDQGN WDLDYNGASN GWNAEAMEAS DEDDDAYEDD NGVEQLGEED  1680
SDGDLEISDA SDVVANKAGN DDGSDLAVSE DYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	85	RRLKEKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein