PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294760.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 356aa MW: 39809.4 Da PI: 8.5673

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.4	1.5e-24	73	117	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++ +k+CErH+hrgr+rsrk++e XP_021294760.1 73 DPEPGRCRRTDGKKWRCSKEAYPESKYCERHMHRGRNRSRKPVEV 117 79****************************************985 PP
2	QLQ	60.8	3.8e-21	8	42	1	35
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 s+FT++Q+q+L++Q+l++Ky+++++P+PpeL+ + XP_021294760.1 8 SPFTPTQWQELEHQALIFKYMVSGVPIPPELIYSV 42 89*****************************8665 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MISARNRSPF TPTQWQELEH QALIFKYMVS GVPIPPELIY SVKEVXSSLA SRLXPHQPIG 60 WGCFQVGFGR KADPEPGRCR RTDGKKWRCS KEAYPESKYC ERHMHRGRNR SRKPVEVSST 120 TAVCTTPPPP TSSILSPSFS SINRNLSIST SSNSSLSSSS SSFSFSPLSS SPIAPEIYAH 180 HNPNQTTHLN HFLYSHPSTS TRPPGSGLSF QNDTSPHHFL DSGAGIISFT HTDKDYRYVH 240 GTREGMDERS FFPEASGSAR VVSDSYQPLT VSSYKSYPQS EYQSFGDSGS KQRQQQQQEQ 300 HCFVLGTDIK SARPIKPEKD DETQKPVHQF FGDHWPPRNT DSWLDLASNS GVHSDS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MISARNRSPF TPTQWQELEH QALIFKYMVS GVPIPPELIY SVKEVXSSLA SRLXPHQPIG  60
WGCFQVGFGR KADPEPGRCR RTDGKKWRCS KEAYPESKYC ERHMHRGRNR SRKPVEVSST  120
TAVCTTPPPP TSSILSPSFS SINRNLSIST SSNSSLSSSS SSFSFSPLSS SPIAPEIYAH  180
HNPNQTTHLN HFLYSHPSTS TRPPGSGLSF QNDTSPHHFL DSGAGIISFT HTDKDYRYVH  240
GTREGMDERS FFPEASGSAR VVSDSYQPLT VSSYKSYPQS EYQSFGDSGS KQRQQQQQEQ  300
HCFVLGTDIK SARPIKPEKD DETQKPVHQF FGDHWPPRNT DSWLDLASNS GVHSDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-62	GRF family protein