PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294692.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 452aa MW: 49569.3 Da PI: 5.8044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.3e-08	358	398	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_021294692.1 358 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 398 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MDGLGWDDSE VVANSLPVWN SQRNDIEDSF LMSNSNSSMY GGKMDLPEDI FNPVQELQKA 60 EPSRVNPDSD IVREIVQQQV SELDSVNVAS NFNMLQRQGV RLAADTSLLK SANWGDALSQ 120 ELYSSALMKR AYGLSTSNAS ISDIGMAVQS QVINGLRNGK AGATTTGSLE SFDCLLSASN 180 SNTDTSVEDD GISMIFSDCK NLWNFAASSA VSSGESENNG SNTGSKDFNC PVNELDETLS 240 QSSSDRYFKN GKLSQTKPSF SKRGSDQKGG FRLIPENPPK AKKARTEKRP SSSNINFQQP 300 SSSVSSSIEE PDPEAIAQMK EMIYRAAAFR PVNLGLEVVE KPKRKNVRIS TDPQTVAARQ 360 RRERISERIR VLQRLVPGGS KMDTASMLDE AANYLKFLRS QVKALENLGH KLEPMNCPPT 420 NLAFSSLPIN HSLPMQTHLP LLNLNHIQHP QS

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MDGLGWDDSE VVANSLPVWN SQRNDIEDSF LMSNSNSSMY GGKMDLPEDI FNPVQELQKA  60
EPSRVNPDSD IVREIVQQQV SELDSVNVAS NFNMLQRQGV RLAADTSLLK SANWGDALSQ  120
ELYSSALMKR AYGLSTSNAS ISDIGMAVQS QVINGLRNGK AGATTTGSLE SFDCLLSASN  180
SNTDTSVEDD GISMIFSDCK NLWNFAASSA VSSGESENNG SNTGSKDFNC PVNELDETLS  240
QSSSDRYFKN GKLSQTKPSF SKRGSDQKGG FRLIPENPPK AKKARTEKRP SSSNINFQQP  300
SSSVSSSIEE PDPEAIAQMK EMIYRAAAFR PVNLGLEVVE KPKRKNVRIS TDPQTVAARQ  360
RRERISERIR VLQRLVPGGS KMDTASMLDE AANYLKFLRS QVKALENLGH KLEPMNCPPT  420
NLAFSSLPIN HSLPMQTHLP LLNLNHIQHP QS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	359	364	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-76	bHLH family protein