PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294691.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 474aa MW: 51946.9 Da PI: 5.2263

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.1	6.7e-08	380	420	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L XP_021294691.1 380 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 420 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MDGLGWDDSE VVANSLPVWN SQRNDIEDSF LMSNSNSSMY GGKMDLPEDI FNPVQELQKA 60 EPSRVNPDSD IVREIVQQQV SELDSVNVAS NFNMLQRQGV RLAADTSLLK SANWGDALSQ 120 ELYSSALMKR AYGLSTSNAS ISDIGMAVQS QVINGLRNGK AGATTTGSLE SFDCLLSASN 180 SNTDTSVEDD GISMIFSDCK NLWNFAASSA VSSGESENNG SNTGSKDFNC PVNELDETLS 240 QSSSDRYFKN GKLSQTKPSF SKRGSDQSEF KVGLNCGYFN LLQTDSSATE GGFRLIPENP 300 PKAKKARTEK RPSSSNINFQ QPSSSVSSSI EEPDPEAIAQ MKEMIYRAAA FRPVNLGLEV 360 VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQRLVPG GSKMDTASML DEAANYLKFL 420 RSQVKALENL GHKLEPMNCP PTNLAFSSLP INHSLPMQTH LPLLNLNHIQ HPQS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MDGLGWDDSE VVANSLPVWN SQRNDIEDSF LMSNSNSSMY GGKMDLPEDI FNPVQELQKA  60
EPSRVNPDSD IVREIVQQQV SELDSVNVAS NFNMLQRQGV RLAADTSLLK SANWGDALSQ  120
ELYSSALMKR AYGLSTSNAS ISDIGMAVQS QVINGLRNGK AGATTTGSLE SFDCLLSASN  180
SNTDTSVEDD GISMIFSDCK NLWNFAASSA VSSGESENNG SNTGSKDFNC PVNELDETLS  240
QSSSDRYFKN GKLSQTKPSF SKRGSDQSEF KVGLNCGYFN LLQTDSSATE GGFRLIPENP  300
PKAKKARTEK RPSSSNINFQ QPSSSVSSSI EEPDPEAIAQ MKEMIYRAAA FRPVNLGLEV  360
VEKPKRKNVR ISTDPQTVAA RQRRERISER IRVLQRLVPG GSKMDTASML DEAANYLKFL  420
RSQVKALENL GHKLEPMNCP PTNLAFSSLP INHSLPMQTH LPLLNLNHIQ HPQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	381	386	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-66	bHLH family protein