PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021294687.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 234aa MW: 26147 Da PI: 8.2199

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021294687.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.9	5.5e-14	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l+ +++++G +W+ a+ g+ R++k+c++rw +yl XP_021294687.1 15 KGSWSPDEDRKLIAYINRHGIWNWTEMAKPAGLQRSGKSCRLRWVNYL 62 799***************99**********************97 PP
2	Myb_DNA-binding	60.5	3.6e-19	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eEde +++++++lG++ W+ Ia++++ gRt++++k++w+++l XP_021294687.1 68 RGNFTREEDETIIELHERLGNR-WSVIASRLP-GRTDNEIKNHWHTHL 113 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MAKASQSVEK RTLRKGSWSP DEDRKLIAYI NRHGIWNWTE MAKPAGLQRS GKSCRLRWVN 60 YLRPGIKRGN FTREEDETII ELHERLGNRW SVIASRLPGR TDNEIKNHWH THLRKRLKYN 120 SVSTSELFQI SNVETGKKSS SEVDLPPAIA PANSESSSAI QLSQQFSTDS LPSSGSKPAA 180 EIDRYQTTED TLVSSETFGE LQSILEQPFT AEGSSTADNY GAIYAEPGIS ATSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	9e-54	MYB family protein