PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294673.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 284aa    MW: 31418.3 Da    PI: 6.5229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000233875755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +ErrRR+++ +++ +Lr+            ++Ka+i e A+ YI++Lq
  XP_021294673.1 38 HAERRRRQKLSDRLLTLRSS-----------MNKATIIEDAITYIQELQ 75
                    68***************974...........6788*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MEFGGSGMSD RGPRRGRMGR RRLEDDEEDP EFISKNLHAE RRRRQKLSDR LLTLRSSMNK  60
ATIIEDAITY IQELQKSSQV LTEQLLEMEG SSEEGGKPMA NEIDAAEDMK NYGIKEDVNV  120
TNIDGNKLLI RIIIEKRRGC FTKLIEAMNY LGFELCETNV TTCKGAMLFS SCVQGLKVLP  180
GFLSFMARIH HLCIVLAAGF FSFIVMFQAT DGSRLTPPEA GIDADPPDVK MIAEGPVIRA  240
IGKHSSLDKS AAGGDVILGG FVMAVVVAVV CYLRITRKSQ EAYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12046RRRLEDDEEDPEFISKNLHAERRRRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.15e-27bHLH family protein