PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294601.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 275aa    MW: 30908.3 Da    PI: 8.2678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-1374124355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     + h e+Er+RR+++ s ++ Lr+llP       ++K s ++   +Av+YIk+L+
  XP_021294601.1  74 KLHREIERQRRQDMASLYASLRSLLPGeY---IKGKRSMSDHMNEAVNYIKHLE 124
                     67*************************77...********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MFPLQQSDDM VYQIFSNSNQ HKIPQDLIRD HASLEGTPIP IIGNSMGQSQ RRKVCHMEST  60
STQAFTCDKY KKQKLHREIE RQRRQDMASL YASLRSLLPG EYIKGKRSMS DHMNEAVNYI  120
KHLEKKVKDL DVKRDELKRA SNLAALGSET ESSNQCFIIR PCLIGIEIMF RCGFEEQGLP  180
LSRVLAALVD EGLPVVSCIS TKSEEYLLHT IQTEVNDPTS FNLSGLQQKL AKHCIASSCS  240
PNETARVGCR HITWTVAICI STFTLGNNGL SSKNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15174RRKVCHMESTSTQAFTCDKYKKQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.19e-44bHLH family protein