PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294489.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family Trihelix
Protein Properties Length: 349aa    MW: 39024.1 Da    PI: 9.0561
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14.2e-1723101272
        trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+++Liea++ ++er  +++          + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ +
  XP_021294489.1  23 WTVNETMVLIEAKKMDDERRMKKSgdsegrskPTELRWKWVEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYQRRTA 101
                     *************97777666532223333338899*************************************999853 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MHLVMADQGG NNIVMREYRK GNWTVNETMV LIEAKKMDDE RRMKKSGDSE GRSKPTELRW  60
KWVEDYCWRK GCMRSQNQCN DKWDNLMRDY KKVREYQRRT AEAGEGNNNN NEGSYWEMEK  120
NARKEKNLPS NMLRQIYEHL EEVVEKKGVQ RVVAAGGSGP NPNIPYVMDR PMTSVQPLLP  180
PLLQHQLPAA IPPAIALPLP ALPPLPPPTA APAPLVQPSP LPYAQPLPTM CDSSDSDTSE  240
YSDSPAKRRR RSGGNGEGTS GTASANNSNE VGTAISKSAS IIAEAIQASE EREERRHRDL  300
VSLHERRLKI EESRTEINRN GIDGLVVAIN KLANSILALA SHKNQSAPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-60Trihelix family protein