PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021294386.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family LSD
Protein Properties Length: 133aa    MW: 14457.4 Da    PI: 7.0479
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021294386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD1375.4e-124569125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg+Cr lLsYPrGA+  +C++C tV
  XP_021294386.1 45 CGSCRQLLSYPRGARQAKCSCCETV 69
                    ************************9 PP

2zf-LSD142.79.5e-1483107125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C  lL+YP+GA+sVRC++C+ V
  XP_021294386.1  83 CGSCALLLMYPFGASSVRCSSCHLV 107
                     **********************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    
MANKEGGEQH QQQQVEEEEE GPPPGWQSIP PPQPPPSSEM AQMVCGSCRQ LLSYPRGARQ  60
AKCSCCETVN FVLEAHQVGL VKCGSCALLL MYPFGASSVR CSSCHLVTEI GAHNRRPPWS  120
VQQGHPTPPK AVH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-40LSD family protein