PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021294386.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | LSD | ||||||||
Protein Properties | Length: 133aa MW: 14457.4 Da PI: 7.0479 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37 | 5.4e-12 | 45 | 69 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrGA+ +C++C tV XP_021294386.1 45 CGSCRQLLSYPRGARQAKCSCCETV 69 ************************9 PP | |||||||
2 | zf-LSD1 | 42.7 | 9.5e-14 | 83 | 107 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C lL+YP+GA+sVRC++C+ V XP_021294386.1 83 CGSCALLLMYPFGASSVRCSSCHLV 107 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence |
MANKEGGEQH QQQQVEEEEE GPPPGWQSIP PPQPPPSSEM AQMVCGSCRQ LLSYPRGARQ 60 AKCSCCETVN FVLEAHQVGL VKCGSCALLL MYPFGASSVR CSSCHLVTEI GAHNRRPPWS 120 VQQGHPTPPK AVH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-40 | LSD family protein |